Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B13
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.7  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   4.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.7  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 105 PPPPPMFGAPPPPPPP 120


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 287 PPPPPSSGMWPPPPPP 302


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 759 PPPPPPPGGCPPPPPP 774



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 760 PPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 759 PPPPPPPGGCPPPPPP 774



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 760 PPPPPPGGCPPPPPPP 775


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 297 PPPPPSSGMWPPPPPP 312


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 41  PPPPPMCGCAPPPPPP 56


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 342 PPPPPPPGGCPPPPPP 357



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 343 PPPPPPGGCPPPPPPP 358


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 703 PPPPPXXGXXPXPGPP 750
           PPPPP  G  P P PP
Sbjct: 580 PPPPPMLGGPPPPPPP 595


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/72 (30%), Positives = 24/72 (33%)
 Frame = +3

Query: 261 PPXXXGRIGXPPWAXXGTRCXPXXPSXARHQXPXXXCGRSGXPXGRXXPXAGGEAAXXXG 440
           PP   G  G P  A    +     P  A    P    G  G P     P A G+A    G
Sbjct: 240 PPGPPGPAGPPGPAGNAGQAGYAQPGPA---GPPGDAGPDGAPGNPGQPGAPGDAG-APG 295

Query: 441 RAGXALXXPPPR 476
             G     PPPR
Sbjct: 296 SGGGCDHCPPPR 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.146    0.502 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,996,929
Number of Sequences: 27780
Number of extensions: 129847
Number of successful extensions: 1126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)