Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B10
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   187   2e-48
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   186   4e-48
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   6.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   7.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   7.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  187 bits (455), Expect = 2e-48
 Identities = 89/145 (61%), Positives = 100/145 (68%)
 Frame = +1

Query: 163 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 342
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 343 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 522
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 523 XXXXXXXXXXQARGHIIEKIPELPL 597
                      ARGH IE+IPE+PL
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPL 152



 Score =  105 bits (253), Expect = 6e-24
 Identities = 57/113 (50%), Positives = 75/113 (66%)
 Frame = +2

Query: 521 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKS 700
           P LLLA  R  R+E+      P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANS 186

Query: 701 XRLRAGKGKMRNRRRIQRKGPLIIFNKDXGSESRFPQHPRVVELLNVTKLNLL 859
            +LRAGKGK+RNRR +QR+GPL++FN+D G    F   P  VE++NV +LNLL
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPG-VEIVNVRRLNLL 238


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  186 bits (453), Expect = 4e-48
 Identities = 88/145 (60%), Positives = 100/145 (68%)
 Frame = +1

Query: 163 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 342
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 343 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 522
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 523 XXXXXXXXXXQARGHIIEKIPELPL 597
                      ARGH IE+IPE+PL
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPL 152



 Score =  106 bits (254), Expect = 5e-24
 Identities = 57/113 (50%), Positives = 75/113 (66%)
 Frame = +2

Query: 521 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKS 700
           P LLLA  R  R+E+      P  P VV D VQ   KTK+AV  L+ +KA+ D++KV  S
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 186

Query: 701 XRLRAGKGKMRNRRRIQRKGPLIIFNKDXGSESRFPQHPRVVELLNVTKLNLL 859
            +LRAGKGK+RNRR +QR+GPL++FN+D G    F   P  VE++NV +LNLL
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPG-VEIVNVRRLNLL 238


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -3

Query: 609 SATTQGKLGNLFNNVSSSLNERWDASSS 526
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 213 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 308
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 565 HIIEKIPELPLGCSRQSPGDQQDQTGCH 648
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,225
Number of Sequences: 5004
Number of extensions: 63812
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)