Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B10
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 171 5e-43
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 169 2e-42
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.22
03_05_0366 - 23505755-23506441 31 1.2
05_07_0234 - 28566846-28567766 30 2.7
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.3
03_05_0452 + 24464134-24464442 29 6.3
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.3
10_07_0029 + 12031711-12032464,12044289-12044386 28 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (417), Expect = 5e-43
Identities = 81/137 (59%), Positives = 92/137 (67%)
Frame = +1
Query: 187 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 366
T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 367 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 546
IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 80 IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139
Query: 547 XXQARGHIIEKIPELPL 597
ARGH IE +PELPL
Sbjct: 140 LVLARGHRIETVPELPL 156
Score = 77.8 bits (183), Expect = 1e-14
Identities = 38/96 (39%), Positives = 59/96 (61%)
Frame = +2
Query: 572 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIQ 751
++ P P V++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYIN 207
Query: 752 RKGPLIIFNKDXGSESRFPQHPRVVELLNVTKLNLL 859
RKGPLI++ + + ++ V++ NV +LNLL
Sbjct: 208 RKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLL 243
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 169 bits (411), Expect = 2e-42
Identities = 81/141 (57%), Positives = 89/141 (63%)
Frame = +1
Query: 175 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 354
E A +P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 355 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 534
AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134
Query: 535 XXXXXXQARGHIIEKIPELPL 597
ARGH IE +PE PL
Sbjct: 135 AVPSLVLARGHRIEGVPEFPL 155
Score = 83.0 bits (196), Expect = 3e-16
Identities = 47/113 (41%), Positives = 69/113 (61%)
Frame = +2
Query: 521 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKS 700
P L+LA R R+E P FP VV+D ++ I KT Q++ L+++ A++D K S
Sbjct: 137 PSLVLA--RGHRIEGV-----PEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDS 189
Query: 701 XRLRAGKGKMRNRRRIQRKGPLIIFNKDXGSESRFPQHPRVVELLNVTKLNLL 859
+RAGKGKMRNRR I RKGPLI++ + + ++ V++ NV +LNLL
Sbjct: 190 VAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLL 242
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 331 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 441
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 437 PPRHMLPKAP*PDLWVPPP 381
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 217 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 393
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 394 HRSGQGA 414
+ + + A
Sbjct: 168 NDNDEEA 174
>05_07_0234 - 28566846-28567766
Length = 306
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 615 TLSATTQGKLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPP 463
T+ T+G LG LF S +RW S+S+ +P S+ APP
Sbjct: 102 TVPPRTRGPLGRLFLEESRGSFDRWSTSTSSS-SSSSAPASDEGGLDGAPP 151
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 253 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 423
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 424 MCRGGRMFAPTKPWRRW 474
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>03_05_0452 + 24464134-24464442
Length = 102
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 273 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 374
V+++ ++LLR G Q ++G R C C NSA
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 316 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 420
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 442 YVHHDTCYRRHPDRTYG 392
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,513,604
Number of Sequences: 37544
Number of extensions: 539327
Number of successful extensions: 1974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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