Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B10
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 163 1e-40
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 28 7.4
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 28 7.4
Z75531-7|CAA99798.2| 316|Caenorhabditis elegans Hypothetical pr... 28 9.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 163 bits (396), Expect = 1e-40
Identities = 79/145 (54%), Positives = 95/145 (65%)
Frame = +1
Query: 163 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESW 342
+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESW
Sbjct: 8 TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66
Query: 343 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 522
GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126
Query: 523 XXXXXXXXXXQARGHIIEKIPELPL 597
QARGH+I+++ E+PL
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPL 151
Score = 94.3 bits (224), Expect = 1e-19
Identities = 46/89 (51%), Positives = 62/89 (69%)
Frame = +2
Query: 593 PWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIQRKGPLII 772
P VV+DKV+ KTK+AV+FLRR W+DI KVY S R RAGKGK+RNR+ Q+ GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209
Query: 773 FNKDXGSESRFPQHPRVVELLNVTKLNLL 859
+ +D F P V+++NV +LNLL
Sbjct: 210 YGQDAECARAFRNIPG-VDVMNVERLNLL 237
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 280 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 450
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 451 PTKP 462
KP
Sbjct: 197 APKP 200
>Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical
protein F11A6.1b protein.
Length = 760
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/74 (25%), Positives = 41/74 (55%)
Frame = +2
Query: 611 KVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIQRKGPLIIFNKDXG 790
KV E ++ +Q + R K +S++ +VY+S + + K ++ ++ IF K G
Sbjct: 511 KVDEQHRCRQ--FYPSRYKRFSNLPEVYRSLQ-KFPKISRFFQKFLEVSEVHTIFQKFPG 567
Query: 791 SESRFPQHPRVVEL 832
+ +RF + P+++E+
Sbjct: 568 TSTRFQKFPKILEI 581
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 602 VADKVQEINKTKQAVIFLRRLKAWSDILKVYK-SXRLRAGKGKMRNRRRIQRKGPLIIFN 778
V V E+ KTK VI + LKA ++ +K K R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 779 KD 784
KD
Sbjct: 473 KD 474
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 751 LDTTTVAHFTLTSTKTXRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 599
L+ +VA L TKT RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 602 VADKVQEINKTKQAVIFLRRLKAWSDILKVYK-SXRLRAGKGKMRNRRRIQRKGPLIIFN 778
V V E+ KTK VI + LKA ++ +K K R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 779 KD 784
KD
Sbjct: 473 KD 474
>Z75531-7|CAA99798.2| 316|Caenorhabditis elegans Hypothetical
protein C54D10.8 protein.
Length = 316
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +2
Query: 536 ASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRA 715
A +R +ED L + + QE+N+ + + L ++K W+D+++ + RL +
Sbjct: 142 AQERLREIEDQLARDLEELRRCDQQRRQEMNEQMENIRRLLQMKIWNDVIESNWTKRLNS 201
Query: 716 GKGKMRNRRR 745
+ ++ R
Sbjct: 202 LRSSNKDVER 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,003,585
Number of Sequences: 27780
Number of extensions: 392568
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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