Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    27   4.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 773 PXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGAI 874
           P P+   P  P PP   GV  A   PPPP   A+
Sbjct: 754 PAPIMGGPPPPPPPP--GVAGAGPPPPPPPPPAV 785


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/79 (25%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
 Frame = +1

Query: 658  PXXLXPXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGG--X 831
            P    P +P        P P    P  P          PP P      PP P P G    
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA-----PPVPKPSVAAPPVPAPSGAPPV 1161

Query: 832  XRXXXSXXPXXXGHSGXPP 888
             +   +  P     SG PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPP 1180


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 RVDSYNRKHSDQCKSDRKFHDFYS*NRKLIITS 68
           RV  ++    D    DRKFHD    NRKL +TS
Sbjct: 259 RVKKHDYGGEDWSLLDRKFHDDDFSNRKLDLTS 291


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 772 PPXPFXPPXXPPXPGPFG 825
           PP  F PP  PP P P G
Sbjct: 14  PPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 814 RGXGGXXXGGKGXGXPXKXKRPXSPGGXGGF 722
           RG  G   GG G G       P  PGG GGF
Sbjct: 183 RGHNGGGFGGFGGGSGGP---PPGPGGFGGF 210


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 253 VNAMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSDQCKSDRKFHDFYS 95
           V+ ++ I NFHW  +     I  V  +  ++D Y R +  + +S  + H  Y+
Sbjct: 388 VDVLLAIMNFHWDESNELTPIVAVDNMLQKLDKYERLYPSR-RSILQEHSLYA 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,762
Number of Sequences: 5004
Number of extensions: 31434
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)