Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B09
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 33 0.36
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.48
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 0.83
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.1
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.4
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 3.4
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 3.4
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 3.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 4.4
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 4.4
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 4.4
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 4.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.4
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 4.4
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 29 4.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 5.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.9
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.8
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 28 7.8
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 28 7.8
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 28 7.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Frame = -2
Query: 884 GKPEWPXXXGXXEXXXRXXPPXGPGXGGXXG--GXKGXGGXXKXKTXXFPGXXGRVXLGX 711
G+P P G + PP PG GG G G G G PG G+V G
Sbjct: 210 GQPGQPGEPGHSDTSSTAGPPGPPGPGGPPGQDGHPGDAGA--------PGAPGQVVAGP 261
Query: 710 GKTXPXPAPGXXG 672
G P G G
Sbjct: 262 GSVGPPGPQGPPG 274
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 803 PRPPXXLGVGXAXXFPPPPXGGAIXVXP 886
P PP G G FPPPP GG + P
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHMPP 783
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 391 PPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPP 432
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 406 PPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPP 447
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 421 PPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPP 462
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 436 PPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPP 477
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 226 PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPP 267
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 241 PPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPP 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 286 PPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPP 327
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 316 PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPP 357
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 331 PPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPP 372
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 376 PPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPP 417
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 451 PPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPP 492
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 466 PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPP 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPX---PGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 481 PPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPP 522
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 256 PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPP 297
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 346 PPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPP 387
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPP---XPGPFGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP PGPF P SG PP
Sbjct: 361 PPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPP 402
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = +1
Query: 772 PPXPFXPPXXPPXPGP---FGGXXRXXXSXXPXXXGHSGXPP 888
PP PF P PP GP F P G SG PP
Sbjct: 151 PPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPP 192
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 672 SXXPGGRXGXRFXRP*XNPPXPPGEXGRFXFXGXPXPFPPXXXPP 806
S P G P PP P G G G P PF P PP
Sbjct: 163 SGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPP 207
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFG 825
P LP P K T P P K + PP P PP PP P G
Sbjct: 73 PPLPPPPLPLSNPPAKPTPPPPPPKPTIR---PPPIPASPPPRPPASEPVG 120
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFG 825
P LP P K T P P K + PP P PP PP P G
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIR---PPPIPASPPPRPPASEPVG 342
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVX--LFXXPPXPFXPPXXPPXPGPFGGXXRXXX 846
P PGA P T P P PP P PP P PG G R
Sbjct: 121 PGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGT 180
Query: 847 SXXPXXXGHSGXP 885
P G G P
Sbjct: 181 DATPGLPGPRGPP 193
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVX--LFXXPPXPFXPPXXPPXPGPFGGXXRXXX 846
P PGA P T P P PP P PP P PG G R
Sbjct: 121 PGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGT 180
Query: 847 SXXPXXXGHSGXP 885
P G G P
Sbjct: 181 DATPGLPGPRGPP 193
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +1
Query: 715 PKXTRPXXPGKXXVXLFXXPPXPFXPPXXP---PXPGPFGGXXRXXXSXXPXXXGHSGXP 885
P + P PG PP P PP P PGP G P G SG P
Sbjct: 209 PAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPP 268
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 772 PPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PP P PP P PG G R P G G P
Sbjct: 154 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 191
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +1
Query: 715 PKXTRPXXPGKXXVXLFXXPPXPFXPPXXP---PXPGPFGGXXRXXXSXXPXXXGHSGXP 885
P + P PG PP P PP P PGP G P G SG P
Sbjct: 204 PAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPP 263
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 772 PPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PP P PP P PG G R P G G P
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 186
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = +1
Query: 715 PKXTRPXXPGKXXVXLFXXPPXPFXPPXXP---PXPGPFGGXXRXXXSXXPXXXGHSGXP 885
P + P PG PP P PP P PGP G P G SG P
Sbjct: 204 PAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPP 263
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 772 PPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PP P PP P PG G R P G G P
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPGPRGPP 186
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXX--PPXPFXPPXXPPXPGPFGGXXRXXX 846
P LPG P RP PG+ + PP PP P GP G +
Sbjct: 101 PGLPGRNGKPGVPGAPG-RPGTPGRPPIVCEEQDVPPCNPCPPGPPGPQGPTGNSGQPGR 159
Query: 847 SXXPXXXGHSGXP 885
P G G P
Sbjct: 160 PGNPGRPGSPGTP 172
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 779 PLSXXPXTPRPPXXLGVGXAXXFPPPP 859
PLS TP PP +G+ PPPP
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPPP 556
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PGA P P+ P PG+ P P P P PG G S
Sbjct: 212 PITPGAPGPQGAPGPQGP-PGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSG 270
Query: 853 XPXXXGHSGXPP 888
P G G P
Sbjct: 271 TPGGVGEKGICP 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 775 PXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
P P PP P PGP G P G G P
Sbjct: 147 PCPQGPPGPPGPPGPSGDAGSNGNPGSPGQDGQPGAP 183
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PGA P P+ P PG+ P P P P PG G S
Sbjct: 179 PITPGAPGPQGTPGPQGP-PGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSG 237
Query: 853 XPXXXGHSGXPP 888
P G G P
Sbjct: 238 TPGGVGEKGICP 249
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PGA P P+ P PG+ P P P P PG G S
Sbjct: 212 PITPGAPGPQGTPGPQGP-PGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSG 270
Query: 853 XPXXXGHSGXPP 888
P G G P
Sbjct: 271 TPGGVGEKGICP 282
>Z70680-2|CAA94573.1| 424|Caenorhabditis elegans Hypothetical
protein C25G4.4 protein.
Length = 424
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 199 FAIGTVPAVFLRVDSYNRKHSDQCKSDRKFHDFYS 95
FA+G P V RV S R Q K D F+D S
Sbjct: 332 FALGIPPVVVHRVQSIERNAYQQRKHDEMFNDIQS 366
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 176 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPG 274
G PDG PGV +D + GVN DG+PG
Sbjct: 429 GERGPDG--TPGVPGEDGIDGEQGVNGQDGQPG 459
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Frame = +3
Query: 681 PGGRXGXRFXRP*XNPPXPPGEXGRFXFXGXPXPFP-----PXXXPPXPRXXWGXXXXXX 845
P GR P PP PP G G P P P P PP P +
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM 362
Query: 846 FXXPPXXGP 872
+ PP P
Sbjct: 363 YPPPPPSRP 371
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 773 PXPLSXXPX-TPRPPXXLGVGXAXXFPPPPXG 865
P P+ P TPRPP G PPPP G
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG 305
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 739 PGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PG+ V P P PP P PG G S P G G P
Sbjct: 628 PGQPGVDGLPGPSGPVGPPGAPGYPGEKGDAGLPGLSGKPGQDGLPGLP 676
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 739 PGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PG+ V P P PP P PG G S P G G P
Sbjct: 627 PGQPGVDGLPGPSGPVGPPGAPGYPGEKGDAGLPGLSGKPGQDGLPGLP 675
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 739 PGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PG+ V P P PP P PG G S P G G P
Sbjct: 627 PGQPGVDGLPGPSGPVGPPGAPGYPGEKGDAGLPGLSGKPGQDGLPGLP 675
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 739 PGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PG+ V P P PP P PG G S P G G P
Sbjct: 628 PGQPGVDGLPGPSGPVGPPGAPGYPGEKGDAGLPGLSGKPGQDGLPGLP 676
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Frame = +3
Query: 681 PGGRXGXRFXRP*XNPPXPPGEXGRFXFXGXPXPFP-----PXXXPPXPRXXWGXXXXXX 845
P GR P PP PP G G P P P P PP P +
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM 372
Query: 846 FXXPPXXGP 872
+ PP P
Sbjct: 373 YPPPPPSRP 381
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 773 PXPLSXXPX-TPRPPXXLGVGXAXXFPPPPXG 865
P P+ P TPRPP G PPPP G
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG 315
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 739 PGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
PG+ V P P PP P PG G S P G G P
Sbjct: 664 PGQPGVDGLPGPSGPVGPPGAPGYPGEKGDAGLPGLSGKPGQDGLPGLP 712
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 781 PFXPPXXPPXPGPFGGXXRXXXSXXPXXXGHSGXP 885
P PP P PGP G R P G G P
Sbjct: 170 PAGPPGPPGNPGPQGNSGRPGMDGMPGRNGRCGRP 204
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 687 GRXGXRFXRP*XNPPXPPGEXGR--FXFXGXPXPFPPXXXPPXPRXXWGXXXXXXFXXPP 860
G G R P +PP PP G G P P P PP PR PP
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283
Query: 861 XXG 869
G
Sbjct: 284 PAG 286
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +2
Query: 710 PXLXKPAPPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGA 871
P P PP G G P P PP G PPP GG+
Sbjct: 267 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 320
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 687 GRXGXRFXRP*XNPPXPPGEXGR--FXFXGXPXPFPPXXXPPXPRXXWGXXXXXXFXXPP 860
G G R P +PP PP G G P P P PP PR PP
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304
Query: 861 XXG 869
G
Sbjct: 305 PAG 307
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +2
Query: 710 PXLXKPAPPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGA 871
P P PP G G P P PP G PPP GG+
Sbjct: 288 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 341
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +3
Query: 687 GRXGXRFXRP*XNPPXPPGEXGR--FXFXGXPXPFPPXXXPPXPRXXWGXXXXXXFXXPP 860
G G R P +PP PP G G P P P PP PR PP
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289
Query: 861 XXG 869
G
Sbjct: 290 PAG 292
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +2
Query: 710 PXLXKPAPPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGA 871
P P PP G G P P PP G PPP GG+
Sbjct: 273 PRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGS 326
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PG P PG PP P P P PG G + S
Sbjct: 197 PGNPGQAGAPGQPGADAQSESIPGAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSG 256
Query: 853 XPXXXGHSGXP 885
P G G P
Sbjct: 257 APGQPGADGNP 267
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +1
Query: 658 PXXLXPXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFG 825
P P PG G G P P P + PP F P PP P G
Sbjct: 70 PNGFIPPPPGPG-GIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG 124
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +2
Query: 710 PXLXKPAPPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGAIXV 880
P P PP P S P P P + G PPPP GG + V
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGGLMHV 822
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +2
Query: 710 PXLXKPAPPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGGAIXV 880
P P PP P S P P P + G PPPP GG + V
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGGLMHV 822
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 731 PPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGG 868
PP G G G P P++ P P PP L PPPP GG
Sbjct: 707 PPITG-GPPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 731 PPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGG 868
PP G G G P P++ P P PP L PPPP GG
Sbjct: 707 PPITG-GPPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGG 750
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 731 PPXRGXGXFXFXGXPXPLSXXPXTPRPPXXLGVGXAXXFPPPPXGG 868
PP G G G P P++ P P PP L PPPP GG
Sbjct: 290 PPITG-GPPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPPPPPGG 333
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = -2
Query: 884 GKPEWPXXXGXXEXXXRXXPPXGPGXGGXXG--GXKGXGGXXKXKTXXFPGXXGRVXLGX 711
G+ P G PP PG G G G +G G T PG G
Sbjct: 165 GQSGHPGRNGNDGGVGPQGPPGPPGNNGEGGRDGPRGEQGRPAISTPALPGDPG----AP 220
Query: 710 GKTXPXPAPGXXG 672
G+ P PG G
Sbjct: 221 GEPGPSGLPGDQG 233
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PG P PG PP P P P PG G S
Sbjct: 197 PGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAPGPKGPSG 256
Query: 853 XPXXXGHSGXP 885
P G G P
Sbjct: 257 APGQPGADGNP 267
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PG P PG PP P P P PG G S
Sbjct: 197 PGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAPGPKGPSG 256
Query: 853 XPXXXGHSGXP 885
P G G P
Sbjct: 257 APGQPGADGNP 267
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +1
Query: 673 PXLPGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSX 852
P PG P PG PP P P P PG G S
Sbjct: 197 PGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAPGPKGPSG 256
Query: 853 XPXXXGHSGXP 885
P G G P
Sbjct: 257 APGQPGADGNP 267
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = -2
Query: 884 GKPEWPXXXGXXEXXXRXXPPXGPGXGGXXGGXKGXGGXXKXKTXXFPGXXGRVXLGXGK 705
G P P G PP PG G G GG PG G V G+
Sbjct: 184 GAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQPGGPGN------PGAPGAVTEVPGQ 237
Query: 704 TXPXPAPGXXG 672
P PG G
Sbjct: 238 QGPPGPPGPAG 248
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 682 PGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPX 861
PG G P K P K PP P P P PG G P
Sbjct: 199 PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGWPG 258
Query: 862 XXGHSGXP 885
G SG P
Sbjct: 259 VSGESGEP 266
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 682 PGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPX 861
PG G P K P K PP P P P PG G P
Sbjct: 236 PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGWPG 295
Query: 862 XXGHSGXP 885
G SG P
Sbjct: 296 VSGESGEP 303
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = +1
Query: 682 PGAGXGXVXPXPKXTRPXXPGKXXVXLFXXPPXPFXPPXXPPXPGPFGGXXRXXXSXXPX 861
PG G P K P K PP P P P PG G P
Sbjct: 220 PGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPIGAPGMPGLPGRNGLTGGQGERGWPG 279
Query: 862 XXGHSGXP 885
G SG P
Sbjct: 280 VSGESGEP 287
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +3
Query: 729 PXPPGEXGRFXFXGXPXPFPPXXXPPXPRXXWGXXXXXXFXXPPXXGP 872
P PP G G P PP PP P+ G P GP
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGP 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,402
Number of Sequences: 27780
Number of extensions: 267474
Number of successful extensions: 1973
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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