Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B08
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.024
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.17
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 6.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.024
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = -1
Query: 896 PPGGGXXXXXGGXGXRGPXVSXXGX----KGGXKGIPGXRXXGVRXXGGGAXG-GXXPGG 732
PPG G GG G G G GG +G PG G GGG G G PGG
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = -1
Query: 890 GGGXXXXXGGXGXRGPXVSXXGXKGGXKGIPGXRXXGVRXXGGGAXG-GXXPGG 732
GG G G G G GG G PG G+ GGG G G PGG
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 890 GGGXXXXXGGXGXRGPXVSXXGXKGGXKGIPGXRXXGVRXXGGGAXGGXXPG 735
GGG GG G G G GG G G G GGG G PG
Sbjct: 227 GGGPGGFEGGPGGFG------GGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.17
Identities = 30/111 (27%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Frame = +3
Query: 453 PPXXPGPRXSGXGXXXXXPQGGXXGXPXXRGXPXEKPXXQXXPKGPEPVKRAGXXXFSXX 632
PP P PR + G PQG R P P G +P + S
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG--------RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP 388
Query: 633 PXP----PXRTXPKIRXPIXXG---XXPPAGPX*XFPGXSPPWXXPPXXPP 764
P P P R+ P + P+ PP P +PP PP PP
Sbjct: 389 PAPPPAIPGRSAPAL-PPLGNASRTSTPPVPTPPSLPPSAPP-SLPPSAPP 437
Score = 25.8 bits (54), Expect = 8.4
Identities = 25/94 (26%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Frame = +1
Query: 625 PXXPPPLXEPXQKFXPPXPXGXX---PPPXLXXDSXGVXXXXXXXXXXXXXXSRTPXXLX 795
P PPP P P G PPP S G P +
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI- 395
Query: 796 PG--IPLXPPFXPXXETXGPLXPXPPXXWXXPPP 891
PG P PP T P P PP PP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/85 (24%), Positives = 25/85 (29%)
Frame = +1
Query: 637 PPLXEPXQKFXPPXPXGXXPPPXLXXDSXGVXXXXXXXXXXXXXXSRTPXXLXPGIPLXP 816
PPL + PP P PP L + + P L P P+ P
Sbjct: 404 PPLGNASRTSTPPVPT----PPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAPIAP 457
Query: 817 PFXPXXETXGPLXPXPPXXWXXPPP 891
P PL P P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -1
Query: 887 GGXXXXXGGXGXRGPXVSXXGXKGGXKGIPGXRXXGVRXXGGGAXGG 747
GG GG G G + G +GG +G G R G R GG+ GG
Sbjct: 19 GGFNGGRGGFGG-GRGGARGGGRGGARGGRGGR-GGARGGRGGSSGG 63
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = -1
Query: 890 GGGXXXXXGGXGXRGPXVSXXGXKGGXKGIPGXRXXGVRXXGGGAXGGXXPGGG 729
GG G G G G +GG +G G R GGA GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = -1
Query: 902 ARPPG--GGXXXXXGGXGXRGPXVSXXGXKGGXKGIPGXRXXGVRXXGGGAXGGXXPGGG 729
A PG GG GG G G G GG G G G R GG G GG
Sbjct: 2 AYTPGSRGGRGGSRGGRG--GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Query: 728 T 726
+
Sbjct: 60 S 60
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 634 PPPLXEPXQKFXPPXPXG--XXPPPXLXXDS 720
PPP+ P PP P G PPP L S
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 767 GGGAXGGXXPGGGTPXESLXRXGGG 693
GG GG PGGG P S G G
Sbjct: 438 GGSFPGGGFPGGGFPGGSYNSQGFG 462
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = -2
Query: 517 PPWGXXXXXPXPEXRGPGXXGGGNGXGPQXPXXXXRGVGGXFXPXKXSXPXP 362
PP P P PG G G P P G + P + P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,639
Number of Sequences: 5004
Number of extensions: 23284
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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