Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_B07
         (1250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.77 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
            P PP     GG    PPPP      PPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 1039 PPPPXKKXXGGXGXXPPPP 1095
            PPPP      G G  PPPP
Sbjct: 762  PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 1041 PPPPKKXXGGXGGXPPPP 1094
            PPPP    G  G  PPPP
Sbjct: 761  PPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
            PPPP        G  P PP      PPP
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -2

Query: 1120 GGGXXXPXXGGGGXPPXPPXF--FXGGGG 1040
            GGG      G GG PP P  F  F G GG
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,055
Number of Sequences: 5004
Number of extensions: 20512
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)