Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B07
(1250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 38 0.022
07_01_0080 + 587674-588510 33 0.47
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.82
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 1.1
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 31 2.5
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 30 3.3
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.3
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 3.3
06_03_1381 - 29754405-29754525,29754617-29754671,29755383-297554... 30 4.4
07_03_0600 + 19866757-19867218,19867920-19868429 29 5.8
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 7.7
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 37.5 bits (83), Expect = 0.022
Identities = 16/28 (57%), Positives = 16/28 (57%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG P GGGG PP P GGGG
Sbjct: 102 GGGGARPPGGGGGGGPPSLPPGAGGGGG 129
Score = 32.3 bits (70), Expect = 0.82
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG P GGGG P GGGG
Sbjct: 126 GGGGARPPAPGGGGGGGAPRRVLGGGGG 153
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG GGGG P GGGG
Sbjct: 200 GGGGGGGGLGGGGGEGGAPERVIGGGGG 227
>07_01_0080 + 587674-588510
Length = 278
Score = 33.1 bits (72), Expect = 0.47
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPPXFF 1131
PPPP G PPPP PPP F
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPPPPPLF 123
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPPXFFF 1134
PPPP G PPPP PPP F
Sbjct: 92 PPPPPPPPSSGSPPPPPPPPPPPPPPPPPPLF 123
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP PPPP PPP
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPPPP 118
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.82
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP G GG PPPP G
Sbjct: 364 PPPPPPPGGKKGGPPPPPPKG 384
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP K PPPP PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPP 341
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP PPPP PPP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPP 340
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 1.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPP 1094
PPPP + GG GG P PP
Sbjct: 1185 PPPPPRGHGGVGGPPTPP 1202
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 1042 PPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPP G G PPPP PPP
Sbjct: 1085 PPPLPPTLGDYGVAPPPPSIGAGAPPP 1111
Score = 31.1 bits (67), Expect = 1.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP + GG G P PP PP
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPP 1211
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 1044 PPPKKXXGGXGGXPPPPXXG 1103
PPP GG G PPPP G
Sbjct: 1109 PPPPPPPGGITGVPPPPPIG 1128
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP GG PPP PPP
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = -2
Query: 1138 KKKKXGGGGXXXPXX-------GGGGXPPXPPXFFXGGGG 1040
K K GGGG P G G PP PP GGGG
Sbjct: 49 KAPKSGGGGGGSPTAKSPLSKGAGNGEPPAPPAAAAGGGG 88
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 1123 GGGGXXXPXX---GGGGXPPXPPXFFXGGGG 1040
G GG P GGGG PP ++ GGGG
Sbjct: 266 GDGGNAPPAYRGGGGGGGGSRPPIYYNGGGG 296
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPP 1094
PPPP G GG PPPP
Sbjct: 370 PPPPPGAAGRGGGGPPPP 387
>03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.3 bits (65), Expect = 3.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 281 PPPPPNAPMGMPPRIPPPPVGGTQPPPP 308
>06_03_1381 - 29754405-29754525,29754617-29754671,29755383-29755440,
29755819-29755988,29756576-29756780
Length = 202
Score = 29.9 bits (64), Expect = 4.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG G PP PP GGGG
Sbjct: 6 GGGGGGAGEARGADAPPPPPVAAGGGGG 33
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP GG PPPP PPP
Sbjct: 4 PPPPTMN--GGHHAAPPPPQVSGAPPPP 29
>01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 1120 GGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GG P GGGG PP GGGG
Sbjct: 380 GGYGGRPMPGGGGPGAPPPYHGGGGGG 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,256
Number of Sequences: 37544
Number of extensions: 360635
Number of successful extensions: 3163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2370
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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