Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B07
(1250 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 37 0.026
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.74
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.74
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.98
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.98
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.98
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.98
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 30 3.0
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 3.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 3.9
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 9.1
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 9.1
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 29 9.1
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 29 9.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 9.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 9.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 9.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 9.1
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 37.1 bits (82), Expect = 0.026
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP K GG PPPP PPP
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPP 152
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.74
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPP 1119
PPPP + G G PPPP PP
Sbjct: 349 PPPPPRYPSAGPGMYPPPPPSRPPAPP 375
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 1041 PPPPKKXXG--GXGGXPPPPXXG 1103
PPPP G G GG PPPP G
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.74
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPP 1119
PPPP + G G PPPP PP
Sbjct: 359 PPPPPRYPSAGPGMYPPPPPSRPPAPP 385
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 1041 PPPPKKXXG--GXGGXPPPPXXG 1103
PPPP G G GG PPPP G
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPG 350
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP G GG PPPP G
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPG 791
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPP 1094
PPPP GG G PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPP 787
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPPXFF 1131
PPPP GG PPPP PPP F
Sbjct: 769 PPPPPPPPPGGFKGGPPPP------PPPGMF 793
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP GG PPPP G
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPG 778
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP G GG PPPP G
Sbjct: 771 PPPPPPPGGFKGGPPPPPPPG 791
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPP 1094
PPPP GG G PPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPP 787
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPPXFF 1131
PPPP GG PPPP PPP F
Sbjct: 769 PPPPPPPPPGGFKGGPPPP------PPPGMF 793
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP GG PPPP G
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPG 778
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP G GG PPPP G
Sbjct: 354 PPPPPPPGGFKGGPPPPPPPG 374
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPP 1094
PPPP GG G PPPP
Sbjct: 353 PPPPPPPPGGFKGGPPPP 370
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPPXFF 1131
PPPP GG PPPP PPP F
Sbjct: 352 PPPPPPPPPGGFKGGPPPP------PPPGMF 376
Score = 29.1 bits (62), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 1041 PPPPKKXXGGXGGXPPPPXXG 1103
PPPP GG PPPP G
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPG 361
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP G PPPP PPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPP 354
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.9 bits (69), Expect = 0.98
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
PPPP + G PPPP PPP
Sbjct: 564 PPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 30.3 bits (65), Expect = 3.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGG 1043
GGGG GG G P PP + GGG
Sbjct: 196 GGGGGSGGSGGGSGRFPPPPPPYGGGG 222
Score = 29.5 bits (63), Expect = 5.2
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG G G PP PP GGGG
Sbjct: 197 GGGGSGGSGGGSGRFPPPPPP--YGGGG 222
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 1135 KKKXGGGGXXXPXXGGGGXPPXPPXFFXGGG 1043
K GGG P GGGG PP P GGG
Sbjct: 610 KNNQAGGGPGGP--GGGGGPPRGPGGGGGGG 638
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisomerase
III protein.
Length = 759
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -2
Query: 1135 KKKXGGGGXXXPXXGGGGXPPXPPXFFXGGG 1043
K GGG P GGGG PP P GGG
Sbjct: 610 KNNQAGGGPGGP--GGGGGPPRGPGGGGGGG 638
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical protein
F15B9.10 protein.
Length = 373
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 1102 PXXGGGGXPPXPPXFFXGGGG 1040
P GGGG P PP GGGG
Sbjct: 264 PMGGGGGYPQPPPQQGGGGGG 284
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 1042 PPPXKKXXGGXGXXPPPPXXXXXXPPPXFF 1131
PPP GG PPPP PPP F
Sbjct: 84 PPPPPMFAGGI--PPPPPMMGGIPPPPPMF 111
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG GGGG P + GGG
Sbjct: 329 GGGGGGAKSGGGGGGIPGQSVYMGAGGG 356
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG GGGG P GGGG
Sbjct: 330 GGGGGAKSGGGGGGIPGQSVYMGAGGGG 357
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG GGGG P + GGG
Sbjct: 223 GGGGGGAKSGGGGGGIPGQSVYMGAGGG 250
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 1123 GGGGXXXPXXGGGGXPPXPPXFFXGGGG 1040
GGGG GGGG P GGGG
Sbjct: 224 GGGGGAKSGGGGGGIPGQSVYMGAGGGG 251
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 28.7 bits (61), Expect = 9.1
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 1009 FFXXXXXXXXPPPPXKKXXGGXGXXPPPPXXXXXXPPP 1122
FF PPPP + G PPPP PPP
Sbjct: 30 FFPGPLRPWGPPPPWHRNRGPPPFGPPPP--WDRPPPP 65
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 9.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXX-XXXXPPPXFF 1131
PPPP + G PPPP PPP F
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSF 787
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPP 1119
PPP G G PPPP PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPP 267
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPP 1119
PPP G G PPPP PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPP 288
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 9.1
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 1039 PPPPXKKXXGGXGXXPPPPXXXXXXPP 1119
PPP G G PPPP PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPP 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,499,848
Number of Sequences: 27780
Number of extensions: 193057
Number of successful extensions: 1457
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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