Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_B03
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 31 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.64
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.4
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 7.9
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 275 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 168
AIA P +I+P ++RP S+F+KS A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.64
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Frame = +1
Query: 655 PPPP----PXPXPXPXXXXPGAGXSPXXGGLXXSPTLXKPPXXXXXPPPPXP 798
PPPP P P P P P A P GG P PPPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA---PIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Frame = +1
Query: 655 PPPPPX----PXPXPXXXXPGAGXSPXXGGLXXSPTLXKPPXXXXXPPPPXP 798
PPPPP P P P P +P GG P P PPPP P
Sbjct: 732 PPPPPPAVIVPTPAP-APIPVPPPAPIMGG--PPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 659 PPPPPPXXPXXXXFXGRGXPPLXGXXXXPPP*XNPLXXLXPPPPLN 796
PPPPPP P PP PPP + PPPL+
Sbjct: 337 PPPPPP--PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Frame = +1
Query: 655 PPPPPXPXPXPXXXXP-GAGXS-------PXXGGLXXSPTLXKPPXXXXXPPPPXP 798
PPPPP P P G G S P + ++ PP PPPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Frame = +2
Query: 656 PPPPPPPXXP------XXXXFXGRGXPPLXGXXXXPPP*XNPLXXLXPPPPLN 796
PPPPPPP P R L PPP P P PP N
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATP--SQPPRPPTN 288
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 212 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTL 51
L+S H L S + T PR N + K + P ++ F+I + Y TR L
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRIL 345
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +1
Query: 658 PPPPXPXPXPXXXXPGAGXSPXXGGLXXSPTLXKPPXXXXXPPPP 792
PP P P P P P P + KP PPP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +1
Query: 655 PPPPPXPXPXPXXXXPGAGXSPXXGGLXXSPTLXK--PPXXXXXPPPP 792
PP P P P P A + +P+L PP PPPP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +1
Query: 658 PPPPXPXPXPXXXXPGAGXSPXXGGLXXSPTLXKPPXXXXXP--PPPXPXXXXXPXXGNI 831
P PP P P +P L S PP P P P P P I
Sbjct: 492 PLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGI 551
Query: 832 -GAXXPP 849
GA PP
Sbjct: 552 PGATAPP 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,874
Number of Sequences: 5004
Number of extensions: 60121
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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