Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_A24
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 281 4e-76
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 280 1e-75
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 280 1e-75
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 280 1e-75
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 280 1e-75
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 280 1e-75
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 280 1e-75
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 280 1e-75
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 269 2e-72
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 241 6e-64
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 186 1e-47
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 184 1e-46
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 182 3e-46
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 182 3e-46
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 178 5e-45
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 156 2e-38
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 122 4e-28
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 104 1e-22
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 75 5e-14
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 48 1e-05
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 32 0.49
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.85
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 2.6
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 3.4
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 281 bits (690), Expect = 4e-76
Identities = 127/132 (96%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 125/132 (94%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 280 bits (686), Expect = 1e-75
Identities = 126/132 (95%), Positives = 129/132 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 471
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 472 TXIMFETFNSPA 507
T IMFETFN+PA
Sbjct: 121 TQIMFETFNTPA 132
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 155 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 188
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 269 bits (659), Expect = 2e-72
Identities = 119/130 (91%), Positives = 127/130 (97%)
Frame = +1
Query: 118 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAXXK 297
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 298 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTX 477
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 478 IMFETFNSPA 507
IMFETFN+PA
Sbjct: 122 IMFETFNTPA 131
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
D+GDGV+HT PI EGYALP A GRD TD
Sbjct: 154 DTGDGVTHTVPIYEGYALPHAIQRL-DLAGRDLTD 187
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 241 bits (589), Expect = 6e-64
Identities = 108/114 (94%), Positives = 111/114 (97%)
Frame = +1
Query: 166 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAXXKRGILTLKYPIEHGIIT 345
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA KRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 346 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNSPA 507
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN+PA
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 118
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 141 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 174
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 186 bits (454), Expect = 1e-47
Identities = 83/88 (94%), Positives = 85/88 (96%)
Frame = +1
Query: 244 MVGMGQKDSYVGDEAXXKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 423
MVGMGQKDSYVGDEA KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 424 LLTEAPLNPKANREKMTXIMFETFNSPA 507
LLTEAPLNPKANREKMT IMFETFN+PA
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPA 88
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDSTD 680
DSGDGV+HT PI EGYALP A GRD TD
Sbjct: 111 DSGDGVTHTVPIYEGYALPHAILRL-DLAGRDLTD 144
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 184 bits (447), Expect = 1e-46
Identities = 83/86 (96%), Positives = 84/86 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKI 369
KRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 182 bits (443), Expect = 3e-46
Identities = 82/86 (95%), Positives = 84/86 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKI 369
KRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 182 bits (443), Expect = 3e-46
Identities = 82/86 (95%), Positives = 84/86 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDMEKI 369
KRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 178 bits (433), Expect = 5e-45
Identities = 80/83 (96%), Positives = 81/83 (97%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAX 291
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 292 XKRGILTLKYPIEHGIITNWDDM 360
KRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 156 bits (378), Expect = 2e-38
Identities = 71/134 (52%), Positives = 95/134 (70%), Gaps = 4/134 (2%)
Frame = +1
Query: 118 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 288
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 289 XXKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 465
RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 466 KMTXIMFETFNSPA 507
+ I FETFN PA
Sbjct: 122 RSAEIFFETFNVPA 135
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXA 638
DSGDGV+H PI +G+A+ A
Sbjct: 158 DSGDGVTHAVPIVKGFAMKHA 178
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 122 bits (294), Expect = 4e-28
Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 3/123 (2%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAXXKRGIL 309
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 310 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMF 486
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM +MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 487 ETF 495
E +
Sbjct: 129 EQY 131
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYAL 629
DSGDGV+H P+ EG+AL
Sbjct: 158 DSGDGVTHICPVYEGFAL 175
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 104 bits (249), Expect = 1e-22
Identities = 58/144 (40%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Frame = +1
Query: 112 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 255
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 256 GQKDSYVGDEAXXKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 432
D ++GDEA T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 433 EAPLNPKANREKMTXIMFETFNSP 504
E PLN NRE IMFE+FN P
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVP 144
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 576 DSGDGVSHTXPI*EGYALPXAHPPSGPWPGRDST 677
DSGDGV+H P+ +GY + P GRD T
Sbjct: 176 DSGDGVTHCIPVADGYVIGSCIKHI-PIAGRDIT 208
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 75.4 bits (177), Expect = 5e-14
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Frame = +1
Query: 121 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP---------RHQGVMVGMG----- 258
D+V+ LV D GS + GFAG++ P+ PS + + + + G
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 259 --QKDSYVGD-EAXXKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 429
+K+ ++G + R ++ ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 430 TEAPLNPKANREKMTXIMFETFNSPAH 510
+E+ N +A REK+T IMFE F PA+
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAY 155
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/123 (26%), Positives = 57/123 (46%)
Frame = +1
Query: 127 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAXXKRGI 306
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 307 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 486
++ PIE G + NWD ++IW TF + V + LT+ A + + I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 487 ETF 495
+ F
Sbjct: 116 DYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/123 (26%), Positives = 57/123 (46%)
Frame = +1
Query: 127 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAXXKRGI 306
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 307 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 486
++ PIE G + NWD ++IW TF + V + LT+ A + + I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 487 ETF 495
+ F
Sbjct: 116 DYF 118
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = +1
Query: 565 YXAPTPEMVSPTPHPSKKVTLCPXPILXPDLGLVATRPTXLMXIPHPXGLXRSPPHPLTG 744
Y P+P+ V+P P PS +T I P ++ P P + P P
Sbjct: 494 YRLPSPKPVTPEPLPSPTITDVSLAIATPSPEESDDDQELILPSPEPSPVREPTPPPPPR 553
Query: 745 XXXPRTPT 768
PR PT
Sbjct: 554 EPTPREPT 561
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 143 STMAPACARPVSPATTRPAPSSRP 214
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 134 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 241
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 257 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 147
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,900
Number of Sequences: 27780
Number of extensions: 326691
Number of successful extensions: 1315
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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