Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A19
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.85 
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.5  
01_01_0046 - 331758-332627                                             29   6.0  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 190 YXPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 339
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 190 YXPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 348
           Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>01_01_0046 - 331758-332627
          Length = 289

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 766 QPPGKXXXPFWXPXPXPPP 822
           QPP +   P+W   P PPP
Sbjct: 8   QPPQRYWFPYWTSPPPPPP 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,301
Number of Sequences: 37544
Number of extensions: 305567
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)