Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A18
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical ...    32   0.62 
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical ...    31   0.81 
AF036699-6|AAB88357.1|  170|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical ...    30   1.9  
AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical ...    30   1.9  
AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical ...    30   1.9  
AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical ...    30   1.9  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   7.6  

>AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical
           protein M151.2 protein.
          Length = 675

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
 Frame = +3

Query: 171 RDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ 350
           R   D  K++E++ +     L++Q N   K+KD  +  K+ K  +    +   A A+ LQ
Sbjct: 105 RKKDDKLKELENNAEALKTQLQEQTNDAKKAKD--ELQKSLKSAAARATEATTAVAE-LQ 161

Query: 351 GALGDANGK-------AKEALEQSRQNIER 419
             L     +       AKEAL   +QN ER
Sbjct: 162 AKLQTVEKEHKKEIEDAKEALAAEKQNSER 191


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 102 YIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 275
           Y    K  V   C++  +   +  D  +F KDI+   K+ HKTLE   + + K +D Q
Sbjct: 572 YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627


>AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK973.11 protein.
          Length = 447

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 213 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 320
           +EFHKT E+    L K  D  + F  AW DGS+   Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302


>AF036699-6|AAB88357.1|  170|Caenorhabditis elegans Hypothetical
           protein F58F6.3 protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 447 GGPCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 337
           GG  GA    A C A++ P PP+   S  RA+P   W
Sbjct: 96  GGEGGAKNNRAVCLAASRPPPPYLIYSGRRAMPSAEW 132


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKKVXSNVQETNEKLAPKIKAAYDDFAKNTXXVIKKIXE 648
           LQ A +  VQ   +  K + SNV E  + +   I    DD  K      K + E
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEE 359


>AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical
           protein C04C3.5a protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154


>AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical
           protein C04C3.5c protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216


>AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical
           protein C04C3.5b protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227


>AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154


>AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216


>AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 487 LQAAVQNTVQESQKLAKK---VXSNVQETNEKLAPKIKAAYDDFAK 615
           LQA VQN  QE+++L+ K   V S+  E +EK+  K K  Y+   K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 156 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 311
           G     +A ++F D++HHT  F    T +     +   +D  D  K W   SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
           protein C26H9A.2 protein.
          Length = 1334

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 14  PSHYREFLRFDTPLCC 61
           P+  R FLR D+PLCC
Sbjct: 923 PNQLRSFLRLDSPLCC 938


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 447 GGPCGAPRPCARCSASTVPKPP 382
           GG CG P PC   + + V  PP
Sbjct: 65  GGGCGGPAPCGGAAPAYVAPPP 86


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 460  KNATALREKLQAAVQNTVQESQKLAKKVXSNVQETNEKLAPKIKAAYDDFAKNTXXVIKK 639
            +N   + +K    VQ   +  QK+ KK   NVQ+  +K A   K      AKN   + KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,479
Number of Sequences: 27780
Number of extensions: 244151
Number of successful extensions: 1028
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)