Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A15
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.28 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    30   0.48 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.4  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.4  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   6.0  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 173 YDPFSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 319
           Y+   P  ++S +   +L S L      LDD+ K L+L FP++I + RV
Sbjct: 153 YELPDPETKKSKIK--ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +2

Query: 464 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNV--R 634
           VNS G+   E   +   F ++  ++ E+ K  +  P    P   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379

Query: 635 DVDVGLETAQKTXEIAKAVXXTTYAVNIRDDAEF 736
           DVD+ LET +K  ++        Y  N  +D ++
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQY 413


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 669 VFWAVSKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATGLLL 544
           V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 88  VWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 126 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 221
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 200 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 379
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 380 VKAKN 394
            K  N
Sbjct: 163 SKKLN 167


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 443 IQNLPWDVNSEGSW---VYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEF 613
           + N+P +V +E S     ++KDV +    L  +  E+ +   +  +  +   +S ++ E 
Sbjct: 29  VSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEEGEYSSESGRSTPELSPDDFED 88

Query: 614 TT-ESNVRDVDVGLETAQKTXEIAKAVXXTTYAVNI 718
              E    ++D G  +   T ++A  +  + Y  N+
Sbjct: 89  ADDEEEFEEIDAGYSSDSSTEDVAPGLYESPYDENL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,219
Number of Sequences: 5004
Number of extensions: 64249
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)