Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A13
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    33   0.065
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    30   0.46 
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    29   0.80 
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    29   0.80 
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    29   0.80 
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    28   1.4  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   4.3  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 374  SNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSG 532
            +N   L  G  +P +  +F +PQ SP  N V+ +PS    +  + K    K G
Sbjct: 898  ANKYPLNNGANVPALLNSFSSPQLSPLVNRVLNEPSSSPLSSSSLKSPLSKEG 950


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 610  SIIDTIDLGSCCLRLKKRICHLFSWC 533
            +I +++     C  LKK+IC++ +WC
Sbjct: 2400 NITESLSFKELCNYLKKKICYILAWC 2425


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = +2

Query: 359 IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 538
           ++K+ SNL GL  G +  + +P F A  Y+ +  N  + P+   + +  TK V +     
Sbjct: 582 LKKKASNLEGLQEGFEADVSDPRFAA-LYTNH--NFALDPTNPHFKR--TKTVEKIMDES 636

Query: 539 AKKMTDTFFQAQATRPEI 592
            K+ ++   Q Q  +PE+
Sbjct: 637 RKRRSNQLEQTQDGKPEL 654


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 272 TQNQYPKYDPTINSDQIYFDDNRP-SGSINIQKELSNLNGLTIGTKIPII-----NPNFG 433
           T     +++P I +D    D  RP SG +++    +    +   + + I+          
Sbjct: 11  THKSITEFEPAIRNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDA 70

Query: 434 APQYSPYANNVIIQPSIQTYNQETTKI 514
            P+   Y  +V I PS+   N+ET +I
Sbjct: 71  TPEGGKYVASVEISPSVSIQNRETDEI 97


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 112 KYQVDMXK*HVLTSPSLSDGM 50
           KYQ+D    HV++ P L DGM
Sbjct: 90  KYQIDKTNVHVVSDPQLQDGM 110


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 143 FEEXKXKKTPAVNKTSVNFIMKVFINL 223
           FE+    K P++N+T  NF+ K F++L
Sbjct: 191 FEQTSNGKLPSINETISNFVPKPFMSL 217


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
 Frame = +2

Query: 398 GTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTPAKKMTDTFFQAQA 577
           G ++  +  + G  +   Y   V  +P   TY   +   +    G   +   D  F  Q 
Sbjct: 119 GPRMEEMKASGGLVESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQL 178

Query: 578 TRPEIDSIDYAIXHF--GINIFKQITSSXPGNMVVSP 682
            + E D +D+AI      I ++KQ   S  G    +P
Sbjct: 179 EQDEADKLDFAIQEVKKTIEMYKQQVQSLQGQKSSTP 215


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +2

Query: 359  IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 538
            ++  L   N L I  K+P   P+     Y P A +  +  S  T  ++  K  P  +  P
Sbjct: 873  VETVLEKFNDLKIENKVPETAPDVVPSSYPPAAES-NVSVSSDTSTKDVEKQEPSSAEQP 931

Query: 539  AKKMTDT 559
            A+ + ++
Sbjct: 932  AQGIAES 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,290
Number of Sequences: 5004
Number of extensions: 58880
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)