Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A12
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.1  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   8.1  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   8.1  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 743 PTGVSYEKAPRF--PGRXERRDRYPGKRPGSEQESARGSFQGET 618
           P+ +S + AP F    + +    +  KRP S   S  GS+ G+T
Sbjct: 347 PSSLSRKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSWHGDT 390


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 621 FPLEAPSCALLFRPW 665
           FPLE  +CA+ FR W
Sbjct: 177 FPLELTTCAITFRYW 191


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 621 FPLEAPSCALLFRPW 665
           FPLE  +CA+ FR W
Sbjct: 170 FPLELTTCAITFRYW 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,709
Number of Sequences: 5004
Number of extensions: 61049
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)