Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A12
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0240 + 8196140-8198248,8198381-8198650                           31   1.6  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.8  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    30   2.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 558 TKIDAQVRGGETRQDYKDTRR-FPLEAPSCALLFRPWPLTGIPVPPFXPSGKPW 716
           T   A   GGE + D  +     PL  P   LL  P PL  + VP F PS  P+
Sbjct: 519 TATQALSMGGEEQVDASNVPGPAPLPRPPMPLLRPPQPLPLVNVPRFQPSAMPY 572


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 516 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 662
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
 Frame = +1

Query: 556 SQKSTLKSEVAKPDRTIKIPGVS-PWKLPRALSCSDPGRLPGYLSRLSXLPGNR--GAFS 726
           S   TL   +  P ++    G S P + PR LS  D      +LS  +   G     A S
Sbjct: 246 SSAETLTFRLNIPAKSAPSSGFSSPVQSPRRLSSVD------FLSTATSTQGANLSSAQS 299

Query: 727 *LTP--VGISXRCXSSPSKLGCVXQTPRSXPNRCPLIR 834
             +P   G S RC S    +G   ++PRS P R P++R
Sbjct: 300 VWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRSPVLR 337


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,803,290
Number of Sequences: 37544
Number of extensions: 506787
Number of successful extensions: 1535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)