Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A12
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.52 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 472 SHVLSCVIPLILWITVLPPLSELIPLAA 389
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 609 DTRRFPLEAPSCALLFRPWPLTGIPV 686
           D   FP +  +C L F  W   G  V
Sbjct: 156 DVEYFPFDEQTCVLKFGSWTYDGFKV 181


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 493 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 395
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 621 FPLEAPSCALLFRPWPLTGIPV 686
           FP +  SC + F  W   G  V
Sbjct: 165 FPFDEQSCIMKFGSWTYNGAQV 186


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 618 RFPLEAPSCALLFRPW 665
           +FP +   C L+F  W
Sbjct: 148 KFPFDVQECPLIFESW 163


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 685 TGIPVSGQGRNRRAHEGASRGK 620
           T I  +G+G+ R   +G SRG+
Sbjct: 73  TDIEETGRGKGRGHGKGGSRGR 94


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 472 SHVLSCVIPLILWITVLPPLSELIPL 395
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 691 GGTGIPVSGQGRNRRAH 641
           G  G+PV G G  RRA+
Sbjct: 575 GVGGVPVVGAGGGRRAY 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,751
Number of Sequences: 438
Number of extensions: 5263
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)