Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A11
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical pr...    33   0.38 
AL023844-7|CAA19533.1|  346|Caenorhabditis elegans Hypothetical ...    32   0.50 
Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.2  

>U38378-1|AAA79751.1|  418|Caenorhabditis elegans Hypothetical
           protein R11F4.3 protein.
          Length = 418

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 704 PLLXXXIXLRSXXPAXSKYXPNAXTPNP*IXXPXPIXXLSPLP-TPXSPXXTCSPXP 871
           PL      L +  PA SK  P+  TP   I  P     + P+P  P +P  T +P P
Sbjct: 127 PLAQQRQLLTAIAPARSKTVPDLATPELPIPQPPRFAEVPPIPDAPTNPPTTTTPPP 183


>AL023844-7|CAA19533.1|  346|Caenorhabditis elegans Hypothetical
           protein Y48A6B.9 protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 478 GAXXCXCAXWPAPVNPAXINTXHGKYPVTLNLPCVPAXXRVGIVXR 615
           G+  C      +P+NP  IN   G Y V   LP +     VG V +
Sbjct: 34  GSGECLVEWLASPINPLDINRIQGNYAVRAELPVIGGSEGVGRVVK 79


>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 511 APVNPAXINTXHGKYPVTLNLPCV 582
           AP+NPA +N   G YPV   LP V
Sbjct: 55  APINPADLNQIQGVYPVKPALPAV 78


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/63 (26%), Positives = 19/63 (30%)
 Frame = +3

Query: 675 PVPGPWXXXXXSSXXPSXYAAXFLXXLSTXPTPXPLTXKSXAPPP*XXSPXSXHXXPPXX 854
           P P P      +   P       L  +S  P P P       PPP    P      PP  
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 855 PVP 863
           P P
Sbjct: 788 PPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/63 (26%), Positives = 19/63 (30%)
 Frame = +3

Query: 675 PVPGPWXXXXXSSXXPSXYAAXFLXXLSTXPTPXPLTXKSXAPPP*XXSPXSXHXXPPXX 854
           P P P      +   P       L  +S  P P P       PPP    P      PP  
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787

Query: 855 PVP 863
           P P
Sbjct: 788 PPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/63 (26%), Positives = 19/63 (30%)
 Frame = +3

Query: 675 PVPGPWXXXXXSSXXPSXYAAXFLXXLSTXPTPXPLTXKSXAPPP*XXSPXSXHXXPPXX 854
           P P P      +   P       L  +S  P P P       PPP    P      PP  
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370

Query: 855 PVP 863
           P P
Sbjct: 371 PPP 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,252,027
Number of Sequences: 27780
Number of extensions: 253090
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)