Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP11_F_A10
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 2.7
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 27 3.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 4.7
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 27 4.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 6.2
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 8.2
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.2
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 8.2
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 258 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 371
K+E + L+N+D + +K+ YN VSP G LN+
Sbjct: 19 KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 366 NEQLNWLLSYAVRLEYADNVDKY-KNAKVEEXKKAPNVVSS 485
+E LL YA+ +E DNV Y K K + +K P +V+S
Sbjct: 118 SETYQQLLEYALEVERDDNVFTYAKLQKSDMTQKCPTMVAS 158
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 483 KTRHWELSXSLQLWHFYICQHYPRIPTAPHTTIAN*VVH 367
+ R+W LS ++Q +H ++ + TAP+T + + + H
Sbjct: 200 RARNWLLSAAIQPYHSWVYWRDVDVETAPNTILEDLMRH 238
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 30 GIP*DLIRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFK 146
GIP + +E+H+ NF+ + T YLK SF + + LFK
Sbjct: 1187 GIPTQSKKRLEVHMLNFI--SSTLYLKV-SFCSSNFLFK 1222
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 138 LFKLKLSALGHPNPEFFNCEDE--KEYRSVV-LWLE 236
L K +LS L H NPE F ++E K+Y LW +
Sbjct: 138 LLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTD 173
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = -3
Query: 496 SNGLEDTTLGAFFXSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKS 332
S+ + ++ + SSTL+ +S+ S++S+ +S +S S S PS++ + +
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST 358
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 363 LNEQLNWLLSYAVRLEYADNVDKYKNAKVEEXKKAPNVVSSNPLDXLD 506
+N+++ L+ V +E++DN+DK + + + K+A + ++N D L+
Sbjct: 778 VNDEIENTLTIPVEVEHSDNIDK-GSEENDLGKEAVDEANNNQNDVLE 824
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 216 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY-----NTYQKDLVSPAAEGTLNEQLN 380
S++ W D+++R+Y D + L ++ DF ++ +T Q ++ +N N
Sbjct: 353 SIIYWDADKELRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGN 412
Query: 381 W-LLSYAVRL 407
W +L+ A+ L
Sbjct: 413 WSILTRAIAL 422
>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 622 LRXPEPLPTEVNLVNPPXRCV 684
+R P LPT VN+ +P C+
Sbjct: 22 MRSPSQLPTSVNIEDPSKLCI 42
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 57 VELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSA 161
V HLD FVK P Y + +S SNL ++ +S+
Sbjct: 242 VSKHLDGFVKILP--YDRVFSDAKNSNLTRIGISS 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,061
Number of Sequences: 5004
Number of extensions: 46485
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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