Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A05
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    30   2.8  
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    29   3.7  

>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 364 ISDFQMDTXAKTVLLKTKADLHIVGDIVIELTEQSKSFTG 483
           +S+FQM       + K +  L +VGD VI+LT Q +   G
Sbjct: 8   VSEFQMFWSESWAVRKAQEGLRMVGDAVIDLTAQMEGSFG 47


>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +1

Query: 292 IAPSDAGIVIRFKN--LNITGLKNQQISDFQMDTXAKTVLLKTKADL---HIVGDIVIEL 456
           I P + GI    K   L    L+  + SD++  T        T+ D+   ++VG++ I +
Sbjct: 292 IIPREIGIHGNLKVFVLGYNALQATRSSDWEFMTSLTNCSSLTRLDVAHKNLVGEMPINI 351

Query: 457 TEQSKSFTGLYXADTNVIGAV 519
              SK   G+Y ++  + G +
Sbjct: 352 ANLSKELIGIYLSENQITGTI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,185,156
Number of Sequences: 37544
Number of extensions: 367062
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)