Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A05
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    41   1e-05
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +1

Query: 184 QCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIR--FKNLNITGL-K 354
           QC++ A    +   + G+  + I PI+PL V S+  I  S   + +R  +KN+ + GL K
Sbjct: 42  QCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVK-IGESQGSVTLRQEYKNIKLYGLTK 100

Query: 355 NQQISDFQMD 384
           N +I ++ +D
Sbjct: 101 NLEIKNYNID 110


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 553 GVXHFEVQPEXFTCXSXGEPK 615
           G+ H +V+P+       G+PK
Sbjct: 175 GIVHADVKPKNILMSKNGQPK 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,997
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)