Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A02
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    31   0.27 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.5  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    27   4.3  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   5.7  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 589 LISAVVRNTTTFKSSITERAXKCLTALKAXCLTSPVXCXTGFFNIXRDMAER 744
           LI  + +N T F   + E+   CL  LK   + SP+     FF + R+   R
Sbjct: 82  LIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPITLLQCFFPLFRENPTR 133


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 417  CSAGRVCEINEHGDAMCNCIKDC 485
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 160 CK*PRSLGP-TQEDPSSCLSMIRFYVKQAAIASKAGGST 47
           CK  + L P + E+ S C+S +R+ V    + S  GG++
Sbjct: 6   CKRLQKLAPKSPENQSKCISRLRYMVMLDQVESDEGGNS 44


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +1

Query: 361 MKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVT--ASRTVPTRQTPXAWCAQTSTK 534
           M+ + T  +  + +   +T  ++ +  +   ET  +   A+ T P  +T      +T+T 
Sbjct: 50  MEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTPMVETTTIPTVETTTT 109

Query: 535 PXNRIAKYTXSDAYASTTLISAVVRNTTTFKSSITERAXKCLTALKAXCLTSPV 696
           P   +   T +    +TT+   V    T  + ++T    +  T L    +T+P+
Sbjct: 110 PM--VETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAMTTPM 161


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 324 FCLMVSLLVQALRHSVLDVFSLRD 253
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,329
Number of Sequences: 5004
Number of extensions: 48730
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)