Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A02
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    33   0.37 
03_02_0520 + 9092020-9092079,9092253-9093047                           29   6.0  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   8.0  

>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
            7246502-7246522
          Length = 1012

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 234  LRRWTFSSRGADPAVPTPHTTSVGGANDRDH*GQRKKTLHLAFR*FVSM*SRRQSRRKPA 55
            LR+ T S+  A PA+P+   TS   +   DH G  +K L    +   ++  + Q + KP 
Sbjct: 950  LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRLQATLQLAATLLQQIQQQSKPG 1009

Query: 54   GR 49
            G+
Sbjct: 1010 GQ 1011


>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 279 VLDVFSLRDVPAAELLRRWTFSSR 208
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 342 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 208
           + + G F  +  L   AL+  VLD+ ++  +PA  +L+RWT  +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,161,478
Number of Sequences: 37544
Number of extensions: 387482
Number of successful extensions: 1133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)