Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A01
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -1

Query: 414  PXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPGXXP 301
            P  +     PPQ   P  P  P   PPPP   P    P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 420  PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPP 328
            PPP        PP    P  P  P   PPPP
Sbjct: 1707 PPPPPMSV---PPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPG 310
           PPP        P     P  P +P    PPP   PPG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPP 313
           PPP      F PP    P   L     PPPP   PP
Sbjct: 167 PPPS-----FQPPSAAAPATSLPSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,233
Number of Sequences: 5004
Number of extensions: 20026
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)