Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP11_F_A01
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    34   0.092
U64845-3|AAC48032.2|  312|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   1.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   1.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   1.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   1.5  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPGXXPXVLK 289
           PPP      F PP    P  P  P   PPPP   P    P +++
Sbjct: 55  PPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQ 98


>U64845-3|AAC48032.2|  312|Caenorhabditis elegans Hypothetical
           protein F45F2.11 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXP---LSPXKXPPPPXVXPPGXXPXVL 292
           PP   ++    PPQ FFP  P     P   PP P + P    P  L
Sbjct: 221 PPRIARRPPIPPPQFFFPPSPHFSREPHSLPPMPMMLPIPLPPMSL 266


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPP-XVXPPGXXP 301
           PP         PPQ F P  P+ P   PPPP  + PP   P
Sbjct: 41  PPLPCPPPPICPPQ-FCPPPPMCPPPPPPPPPPMCPPPPPP 80



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPGXXP 301
           PPP        PP    P  P+ P +  PPP + PP   P
Sbjct: 31  PPPPPPMCA--PPPLPCPPPPICPPQFCPPPPMCPPPPPP 68


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPG 310
           PPP        P     P  P  P   PPPP   PPG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPG 310
           PPP        P     P  P  P   PPPP   PPG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 420 PPPXXKKXXFXPPQXFFPXXPLSPXKXPPPPXVXPPG 310
           PPP        P     P  P  P   PPPP   PPG
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,936
Number of Sequences: 27780
Number of extensions: 197431
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)