Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P24
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    29   5.3  
02_05_0786 + 31738252-31738605,31739547-31739690                       29   5.3  
01_06_1548 + 38157796-38157955,38158771-38159252                       29   5.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.3  
09_06_0323 - 22337217-22337450,22338263-22339204                       28   9.3  

>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 636 GGNAWYLYSPVGXXXXXXXXXXX*C--SSGGRSPMEKRQQRGLFTVPGLLLAFCSHVLSC 463
           GG  W L  PVG               + GGRSP ++   + LF +P LLL  C +  SC
Sbjct: 283 GGQLW-LVKPVGVWQDVRQTLEESLPGTGGGRSPHDQLVVKVLFILPVLLLT-CGYNQSC 340


>02_05_0786 + 31738252-31738605,31739547-31739690
          Length = 165

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 440 IHRIRGITQERTCEQKASKRPGTVKRPRCWRFSIGLRPPDEHHKNR 577
           I R+  + +ER  EQ  +KR    K  R W+ SI +RPP    +N+
Sbjct: 119 IARMLTVKREREIEQGINKRLSR-KLDRKWKQSIVVRPPPSLRENK 163


>01_06_1548 + 38157796-38157955,38158771-38159252
          Length = 213

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 790 HSPAWRRTTYTELRYLQ-REL*ESATLPEGEKGGQVSG 680
           H P WRR +Y + ++L  R +  SA  P GE     +G
Sbjct: 135 HVPPWRRPSYVQAKWLPCRGVQASALPPGGESAAAANG 172


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 591 GGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSG--SVALSHSSRCRY 749
           GGE  ++    RRF   AP  ALL R  +L     P SP+   + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQL--RAAPASPAAMAAAAVAHSTRCRF 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,970,101
Number of Sequences: 37544
Number of extensions: 579116
Number of successful extensions: 1750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)