Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P24
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.56 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   9.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   9.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   9.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 480 SHVLSCVIPLILWITVLPPLSELIPLAA 397
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 782 WAVCTNPPFSPTXAP 826
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 501 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 403
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 618 DTRRFPLEAPSCALLFRPCR 677
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 480 SHVLSCVIPLILWITVLPPLSELIPL 403
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 750 DTYSVSY---EKAPRFPKGRKADRYPVSGRVGTGE 655
           +T+S+ Y   + A + P   + D Y + GR+  GE
Sbjct: 109 ETFSLLYYEFDVATKEPPPWETDSYKLIGRIAAGE 143


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/29 (27%), Positives = 10/29 (34%)
 Frame = -3

Query: 575 DFCDARQGGGALWKNASNAAFLRFLAFCW 489
           D C    GG  LW+N      +      W
Sbjct: 343 DACQMDSGGPVLWQNPRTKRLVNIGIISW 371


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 721 ATLPEGEKGGQVSGKRQGRNRRAHEGASRGKRLVSL 614
           A +P G     VSG        +  G  RG  +V L
Sbjct: 338 ANVPNGSVTNWVSGNHDNHRVASRFGRQRGDEIVML 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,104
Number of Sequences: 438
Number of extensions: 5973
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)