Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar...    62   8e-11
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   4.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   4.7  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    26   6.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   6.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.1  

>SPAC1296.02 |cox4||cytochrome c oxidase subunit
           IV|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = +3

Query: 165 GYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARI 341
           G  D  +P  LE ATGLER ELL+  +G  D F+MK +  S  GT  +P +V S    R 
Sbjct: 59  GGRDGEVPTDLEQATGLERYELLSELSGR-DAFDMKPLDASRKGTLTDPIMVTSLDPYRH 117

Query: 342 VGCICEEHAT-AITWLWLHKDQPRRC-ECGHWYKL 440
           +GC      +  + W+ ++KD+ RRC ECG  YKL
Sbjct: 118 IGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKL 152


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = -3

Query: 345 QQYEHQSRKVPELGFHGFLL-TSSLPSC*RGHHCRPEGP-----GVPSFPSQWHVPRDQA 184
           QQ +HQ +K P+ G    +  T+S P+    H  + +GP      +PS P     P   A
Sbjct: 270 QQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAP-SNA 328

Query: 183 SFCRHIPA 160
            F   +PA
Sbjct: 329 QFRPSLPA 336


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 419 LATA-RLVLV*PKPGDGCSVFFTNASNNT 336
           LA A  LV+V  +PG GCS F  + +++T
Sbjct: 183 LANAGELVMVLGQPGSGCSTFLRSVTSDT 211


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = -3

Query: 543 DKL*AVITTMRFVSAVTLLDNKLKELLFKGVASQSICTNVHTRNGAVGPCVTKAR*WL*R 364
           D L ++IT  R    + L   +L   + +  A  +  + V   +   G C+ +   W+ +
Sbjct: 247 DILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSS--GGCIDREEEWIQQ 304

Query: 363 VLHKCIQQYEHQSRKVP 313
              +CI+QY +   ++P
Sbjct: 305 FQARCIKQYFYGDDRMP 321


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -2

Query: 322 EGTRVGFSRVPADFFTTFMLKGSSLPA*RARSSFLSKPVACSKGSGI 182
           +GT + FS +P   FT    K +S     A +SFLS   ACSK S +
Sbjct: 591 DGTYL-FSYIPERLFTEKKPKNASKEI--AVTSFLSSHAACSKLSNV 634


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 255 HHCRPEGPGVPSFPSQWHVPRDQASFCRHIPA 160
           HH   + P  P+   Q HVP        H+P+
Sbjct: 309 HHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPS 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,506
Number of Sequences: 5004
Number of extensions: 64624
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)