Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P08
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    32   0.094
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    28   2.0  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.7  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   6.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.2  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 429 TVTQGTCGFCTLEGNCLFQRFLRFNPKPIYIDMGNRYRRHASEDQ 563
           T T   C  CTL G C+  R  R  P   ++D+  +   HASE Q
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQ 147


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 245 HLDTAIAVPGQLVALYVLSGAVLAVACRSAG*TSGTK---PEQRTAPELN-*ILKTLYML 78
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N  +L+ L  +
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEINYFLLRRLLGV 364

Query: 77  IVSDLNT 57
              D NT
Sbjct: 365 KSGDKNT 371


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 RYRRHASEDQEELRHYDEHFLIPRDIF 614
           RY+R ASE  E L  +  HF I   +F
Sbjct: 99  RYKRDASESDELLNEFSNHFGISDPLF 125


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -3

Query: 378 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 244
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 64  KSDTINMYXVFSIQFSSGAVLCSGFVPEVHPADLQATANTAPDNTYSATS 213
           +++ ++ Y   S + SS   +   F P+VH  + Q   N   DN  S +S
Sbjct: 250 RNNPVDFYIPSSFEESSFQTIPEDFEPQVHDHENQTQLNHHLDNNSSISS 299


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 308  RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 219
            RRR+SK+ S  L+ + +EE H  L + I +P
Sbjct: 946  RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,441
Number of Sequences: 5004
Number of extensions: 66328
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)