Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P07
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.74 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 893 PPPPXPPXPPP 925
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 888 PXPPPPPPXXPPP 926
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 700 PXXPXPPPXPPXXPTP 747
           P  P PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 876 PXXPPXPPPPPPXXPP 923
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 409 PPXPXPRPPXP 377
           PP P P PP P
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 885  PPXPPPPP 908
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888  PXPPPPPP 911
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 888  PXPPPPPP 911
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 843 PXXXXPPPPXXPXXPPXPPPPPPXXPP 923
           P    PP P     P  PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
 Frame = +3

Query: 831 PXXPPXXXXPPPPXXPXXPPXPPP-PPPXXPP 923
           P   P     P       PP P   PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 858 PPPPXXPXXPPXPPPPPPXXPPP 926
           P P   P  P    PP P   PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 875 PPXXXXPPPPXPPXPPP 925
           P     PPP  PP  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 825 PXPXXPPXXXXPPPPXXPXXPPXPPPPPP 911
           P    PP     PPP  P  P  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGP--PGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 922 GGXXGGGGGGXG 887
           G   GGGGGG G
Sbjct: 42  GANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,726
Number of Sequences: 438
Number of extensions: 5258
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)