Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P06
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    88   1e-18
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   6.6  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   8.7  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 41/78 (52%), Positives = 58/78 (74%)
 Frame = +3

Query: 378 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 557
           + + F+ E++++M LIIN++Y NKEIFLRELISN SDALDKIR  SL+D   L+A  +L 
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64

Query: 558 IRIKAEPDKRLLHIIDSG 611
           IRI  + + ++L I D+G
Sbjct: 65  IRITPDKENKILSIRDTG 82



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 613 VGMTRADLINNLGTIAKSGTADFLSKMQDG 702
           +GMT+ DLINNLG IAKSGT  F+     G
Sbjct: 83  IGMTKNDLINNLGVIAKSGTKQFMEAAASG 112


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 202 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRK 89
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK 347


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -2

Query: 525 GPSATSDGSC--PTHLN---RSRSTRGGRSLY 445
           GPS TSDG C    +LN   R+ ST  G S++
Sbjct: 417 GPSGTSDGLCELQAYLNSPIRANSTSNGISIF 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,022
Number of Sequences: 5004
Number of extensions: 39882
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)