Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P05
         (1310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   3.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   3.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   3.1  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   7.3  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    29   9.6  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    29   9.6  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    29   9.6  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/59 (32%), Positives = 20/59 (33%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPPRPPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXPXP 1050
            PPP     P   PPR P   R P    T P      P  P +         PPS  P P
Sbjct: 139  PPPPPPRVPRTPPPRSPPPRRPP---MTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPP 194


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPPR---PPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP A  PP   PPR   P  +   P    + P     SP  P           PP+  P
Sbjct: 290  PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPPR---PPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP A  PP   PPR   P  +   P    + P     SP  P           PP+  P
Sbjct: 311  PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPPR---PPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP A  PP   PPR   P  +   P    + P     SP  P           PP+  P
Sbjct: 296  PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 862 LKRXPPPAAXXPPXXTPPRPPXTXRXPHHXXT 957
           L+R PPP A  PP   PP  P T    HH  T
Sbjct: 353 LQRSPPPCASAPP-VAPPTAPST-SFQHHNST 382


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
            protein H28G03.2c protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPP---RPPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP    PP   PP    PP     P H           P  P +LL       PPS  P
Sbjct: 83   PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPP--PMSLLGPPPFSVPPSVPP 140


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
            protein H28G03.2b protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPP---RPPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP    PP   PP    PP     P H           P  P +LL       PPS  P
Sbjct: 106  PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPP--PMSLLGPPPFSVPPSVPP 163


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
            protein H28G03.2a protein.
          Length = 548

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +1

Query: 874  PPPAAXXPPXXTPP---RPPXTXRXPHHXXTXPXXXXXSPXAPATLLXXTXLVXPPSSXP 1044
            PPP    PP   PP    PP     P H           P  P +LL       PPS  P
Sbjct: 356  PPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPP--PMSLLGPPPFSVPPSVPP 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,572,153
Number of Sequences: 27780
Number of extensions: 70320
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)