Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P04
         (906 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    53   1e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    41   0.050
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.066
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.47 
UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4; C...    35   3.3  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 22/25 (88%), Positives = 23/25 (92%)
 Frame = +1

Query: 715 SALMNRPTRGERXFAYWAXFRFLAH 789
           +ALMNRPTRGER FAYWA FRFLAH
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 520 DPDMIRYIDEFGQTTTXMQ 576
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 40.7 bits (91), Expect = 0.050
 Identities = 21/34 (61%), Positives = 22/34 (64%)
 Frame = +3

Query: 720 INESANARGEAVCVLGALPLPRSLTPCXRXSGCG 821
           I + A AR EAV VL ALPL RS T C R  GCG
Sbjct: 267 IRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 40.3 bits (90), Expect = 0.066
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -3

Query: 787 ERGSGXAPNTQTASPRALADSLMQ 716
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 741 RGEAVCVLGALPLPRSLTPCXRXSGCGXRYXL 836
           R   +C  G +PLPRSLT   R  GCG RY L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_A5I0E6 Cluster: Propanediol utilization protein; n=4;
           Clostridium botulinum|Rep: Propanediol utilization
           protein - Clostridium botulinum A str. ATCC 3502
          Length = 279

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 175 KEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMV-DSFN--EFYKN 324
           KE NSI  L    K++IE+   K  S ++ E++K+NF  +  D FN  E YKN
Sbjct: 174 KEMNSIEDLIPDLKESIEKRNIKNISRISEESIKRNFHRLTYDYFNTVEKYKN 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,665,353
Number of Sequences: 1657284
Number of extensions: 12554466
Number of successful extensions: 32405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32394
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)