Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P03
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    29   0.67 
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    28   1.5  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    27   2.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   4.7  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    26   8.2  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   8.2  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 337 PNTPKKNAKSRGKIVAEFVKSKKEAASYVQEMKSYFEECNNFIFVAMDFGNT 492
           P+ P +N KS              A S   E   + ++C + +FV++DFG+T
Sbjct: 793 PSPPNQNGKSLFSFHPSRPAWLLYAGSENCEKNPFADDCRDVVFVSLDFGDT 844


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 581 DMPLKKVEAGLTKMHYXCKGLNK-----ISMKSKLLEELTALLKCNERHLPDAQLQERRP 745
           +M  K + +G+T++H+    L K     I     L E L  ++  N   L +A  Q+RR 
Sbjct: 260 EMCRKLIASGITRLHFYTMNLEKAVKMIIERLGLLDENLAPIVDTNNVELTNASSQDRRI 319

Query: 746 N 748
           N
Sbjct: 320 N 320


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 229 LSKAQVLQKVDHKIHLYLLPLSDCSHCLHHSFHCIRII 116
           +S  +V++ V+H +  Y+  L   S+ +H + HC+ II
Sbjct: 229 MSDEEVIEFVNHYMPQYVFYLGTLSNKVHLNPHCLEII 266


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 301 PLRKKMGVLLNLPNTPKKNAKSRGKIVAEFVKSKKEA 411
           P +K+M    +L +T KK  KSR  I  + + SK+EA
Sbjct: 2   PPKKRMKNGSSLKSTSKKGEKSRNIITIQDLFSKREA 38


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 433 SFLEHMMQPLFYFSQILLQFYLGFLHFSLVYLVSSK 326
           S+L++++ PL++ +  LL F+   +  S VY+ + K
Sbjct: 64  SYLKYLL-PLYFLASCLLTFWSSVVKGSTVYVATKK 98


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 451 ILQNKISFLEHMMQPLFYFSQILLQFYLG 365
           I+ +   FL+H++Q + ++ +  L+ YLG
Sbjct: 601 IVSHDSGFLDHVVQAIIHYERFKLRKYLG 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,644
Number of Sequences: 5004
Number of extensions: 69511
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)