Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P03
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0440 - 9423874-9423999,9424199-9424393,9424885-9425091,942...    40   0.002
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527...    29   3.7  
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137...    29   4.9  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           29   4.9  
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747...    29   6.5  
03_06_0496 + 34328702-34329674,34329726-34330631,34330858-343310...    28   8.6  

>09_02_0440 -
           9423874-9423999,9424199-9424393,9424885-9425091,
           9425518-9425707,9425849-9425931
          Length = 266

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
 Frame = +1

Query: 139 YDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIXXXXXXXXXXXXTWLAVSPLRKKM 318
           + A   + L++  NRDEF+ RP+  +  W +    I            TW+  +    ++
Sbjct: 8   WQAHPQHQLLLLLNRDEFHSRPTKAVGWWGEGSKKI--LGGRDVLGGGTWMGCTK-DGRL 64

Query: 319 GVLLN-LPNTPKKNAKSRGKIVAEFVKSKKEAASYVQEMKSYFEECNNFIFVAMDFGNTT 495
             L N L       A++RG +   F++S K       E+    +E N F  V  D   TT
Sbjct: 65  AFLTNVLEPDAMPGARTRGDLPLRFLQSNKSPLEVATEVAKEADEYNGFNLVLADL--TT 122

Query: 496 PVINSFTN 519
            V+   +N
Sbjct: 123 NVMVYVSN 130


>07_01_0698 -
           5269329-5269579,5270673-5270928,5271158-5271725,
           5271757-5272763
          Length = 693

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 596 KVEAGLTKMHYXCKGLNKISMKSKLLEELTALLKCNERHLPDAQ 727
           +VEAG        +G N   +  + L+ LTA L C   +LPDA+
Sbjct: 96  RVEAGGGSRKRRRRGDNAADLSQRSLDGLTAFLTCLFPYLPDAE 139


>11_01_0170 -
           1373986-1374013,1374061-1374326,1374693-1374926,
           1375034-1375171,1375255-1375557,1376008-1376172,
           1376469-1376933
          Length = 532

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 325 LLNLPN-TPKKNAKSRGKIVAEFVKSKKEAASYVQEMKSYFEECNNFIFV-AMDFGN-TT 495
           ++  PN T     + R K   E +K  K  A   +E  +YFEEC +   + + DF +   
Sbjct: 340 IVTTPNFTEAHKRRPRRKSSVERLKVSKHLA---EEAMNYFEECVSISTLDSTDFSSLED 396

Query: 496 PVINSFTNVTNK 531
           P INS  N+  K
Sbjct: 397 PQINSVVNIPQK 408


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 656  MKSKLLEELTALLKCNERHLPDAQ-LQERRPNLYEE 760
            M + +LE +     C+ RHLPD Q L E RP +Y E
Sbjct: 943  MSAPMLEAIMIRGCCSLRHLPDVQGLHEPRPIVYCE 978


>03_06_0775 -
           36174098-36174204,36174540-36174594,36174690-36174741,
           36174947-36175028,36175110-36175204,36175339-36175727
          Length = 259

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 582 SGKLFPKPKXRICMCCYFVCDIREAIYDWRGVSKVHCYKNEIITFFKIRFHFLNI*CSLF 403
           +GK  P  K     C +++C  +EA    R   K+H ++   +   K     LNI  +LF
Sbjct: 164 NGKTIPFTKG----CSFYICSRKEAALVIR---KIHIFQESPVKPCKFSLEILNIATNLF 216

Query: 402 FTF 394
            TF
Sbjct: 217 DTF 219


>03_06_0496 +
           34328702-34329674,34329726-34330631,34330858-34331062,
           34331152-34331348,34331434-34331492
          Length = 779

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 632 CKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPNLYE 757
           C  L +++++  +L +  +   C+ RH+   Q+ ++R NL+E
Sbjct: 637 CPNLTRLAVR--ILSQTCSAKGCDRRHISFEQIHDQRMNLFE 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,062
Number of Sequences: 37544
Number of extensions: 370591
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)