Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P03
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    62   5e-10
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    52   7e-07
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   7.8  

>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
 Frame = +1

Query: 109 MCILFVYNGSYDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIXXXXXXXXXXXXTW 288
           MCI F+   +  ++  Y LI+  NRDE  DRP+  +  W D    +            TW
Sbjct: 1   MCIGFIKIATSPSEK-YKLIILNNRDEDLDRPTTPIH-WHDG---MLSGVDEKDVARGTW 55

Query: 289 LAVSPLRKKMGVLLNLP---NTPKKNAKSRGKIVAEFVKSKKEAASYVQEMKSYFEECNN 459
           L +     K+G+LL++    ++  KNA SRG IV E++KS  +   + + ++   E+ N 
Sbjct: 56  LGMDA-HGKVGMLLSITQPVDSKHKNAPSRGGIVNEYLKSGTDTTKFYENLRENAEKFNG 114

Query: 460 FIFVAMDFGNTTPV--INSFTN 519
           F FV ++   TT +  + S TN
Sbjct: 115 FQFVGVEKNPTTGLFHVQSLTN 136



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +2

Query: 563 FGNSLPDMPLKKVEAGLTKMHYXCKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERR 742
           F NS P +P KK E GL       K  +++S++ ++ E+L  +  C     PD Q++ + 
Sbjct: 154 FSNSPPHVPFKKTEFGLKMFEEKLKNTDEMSVE-QIFEKLFEIATCRTSCFPDDQIRAQT 212

Query: 743 ---PNLYEELSXIXVCVPE 790
               ++Y+ L+ I V  PE
Sbjct: 213 GFPEHIYKPLTSIFVRFPE 231


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
 Frame = +1

Query: 109 MCILFVYNGSYDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIXXXXXXXXXXXXTW 288
           MCI F+       D  Y LI+  NRDE   RP+ E+  W D    I            TW
Sbjct: 1   MCITFIKTAKSSLDK-YKLILLNNRDEQLLRPTKEM-HWHDG---ILSGVDKQENARGTW 55

Query: 289 LAVSPLRKKMGVLLNLPNTPK-KN--AKSRGKIVAEFVKSKKEAASYVQEMKSYFEECNN 459
           L ++    ++G++L++  T + KN  A SRG IV EF+ +  + +  ++ +K    + N 
Sbjct: 56  LGLNE-NGRIGMMLSITQTQESKNLHAPSRGGIVNEFLNA-NDTSKMIESLKKCASKYNG 113

Query: 460 FIFVAMDFGNT 492
           F  VA++  +T
Sbjct: 114 FQLVAVEKNST 124



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 569 NSLPDMPLKKVEAGLTKMHYXCKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPN 748
           NS P  P +K   G   +    +  ++ S+  ++ E+L ++ K   +  PDAQLQ +  N
Sbjct: 154 NSPPTKPYQKAVQGKKLLREHLENSDQFSV-DQIFEKLLSIAKNTTQWYPDAQLQYQTQN 212

Query: 749 LYE---ELSXIXVCVPE 790
           + E    LS I +  PE
Sbjct: 213 VEEYNRPLSAIFIKYPE 229


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 540 CCYFVCDIREAIYDWRGVSKVHCYKNEIITFFKI 439
           CC  + DI    Y +  +  VH Y N+I+  + +
Sbjct: 134 CCVLIVDIDIMSYMFLSIEGVHSYSNDILLVYDV 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,286
Number of Sequences: 27780
Number of extensions: 377293
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)