Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_P01
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    92   6e-19
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    92   6e-19
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    28   8.1  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = -2

Query: 321 MSAHKTFIIKRKLAXKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 169
           MSA K   IKRKLA K KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = -2

Query: 321 MSAHKTFIIKRKLAXKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 169
           MSA K   IKRKLA K KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 133 FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLXG-QFAL 294
           FYYIT F  F  + + + P P      I  S+ C HP        L +L G +FA+
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHPDVRAAPLYLVELGGLKFAI 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,688
Number of Sequences: 27780
Number of extensions: 280788
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)