Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_O22
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.39 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.7  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   4.8  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   4.8  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 22/60 (36%), Positives = 26/60 (43%)
 Frame = +3

Query: 630 PLEAPSCALLFRPCRLPDTCPPFLPFGKRGAFS*LTL*VSQFGVGRPLQAGLCAEPPXPP 809
           P+  P       P  LP + PP LP G   A     L  S   +  PL AG+ A PP PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA---PPLPPSA-PIAPPLPAGMPAAPPLPP 471


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 551 LNEHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 685
           L ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 759 HRTEIPTA*AMRKRHASRRGEKADRYPVSGRVGTGERT 646
           H  +   A + R+   +RRG + DR+  +GRV T + T
Sbjct: 100 HPVDATGAPSNRRNARARRGREFDRHSQTGRVDTKKAT 137


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 443 RIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQRWRNPT 604
           R+     E T  +  S   G+   PR  RF++G+   + +  N   +Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 659 VPTLPLTGYLSAFSPLREAWRFLIA 733
           +PT P++GYL + S +++ W   IA
Sbjct: 622 IPTTPISGYLRSPSYVQQDWNAKIA 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,046
Number of Sequences: 5004
Number of extensions: 66386
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)