Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_O18
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    54   4e-08
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    31   0.17 
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    31   0.30 
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    29   1.2  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    27   3.7  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    26   8.6  

>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
 Frame = +2

Query: 167 KNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVI 346
           KNG+G +    +RI F +C   G+S+GM++F+   L   +K++  V  ++  R+ + P+I
Sbjct: 13  KNGLGSFTRPCRRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLI 72

Query: 347 VGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQY-TNHPSVQG 508
              Y  G    +     +   I +   L R   G     RL KY   + +PSV+G
Sbjct: 73  RAYYNTGREKVICTRKMSASSIFQKAILCRDSDG--LKPRLIKYPVESTNPSVRG 125


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 129 LLADIYFVFQPLHLNSW-VMLCYALH 55
           L+ D + VFQP H+ SW VML   LH
Sbjct: 97  LIKDKFIVFQPAHIKSWMVMLLRGLH 122


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 507 PWTEGWFVYWYLRSLEFQLLPC*VR 433
           PWT+ W   W+L SL++    C ++
Sbjct: 447 PWTQLWVTLWFLSSLQYYAYECVIK 471


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 470 RKYQYTNHPSVQGTLDSVHVQGPRIEHG 553
           R Y YTN+P  Q  +DS    G ++E+G
Sbjct: 492 RGYYYTNNPEGQPVIDSSVNDGTKVENG 519


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 445 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFPNYD 341
           +L  ++ +  YD+  GFV    P+  P ++FP+ D
Sbjct: 55  VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 651 IHPTFVSRTSVSTVQLPLRVVDCYYRISRRVVRPCSILGP*T*TESRVPWTEG 493
           ++PT     S + V L ++     Y+IS  V+R  ++ GP    E  +P T G
Sbjct: 168 LNPTSPYAASKAAVDLIIQSYRYSYKISVTVIRANNVYGPRQYEEKLIPMTLG 220


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 308 VYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRKYQYT 487
           V +K  +H+    V  Y N D +W  +H+ +  + V W + + T   ++  ++   + Y 
Sbjct: 107 VDMKLTKHQFDRKVQTYKNLDTVWEKIHHDSTGKPVSWSQ-YNTIIVDDSKTKCAAHPY- 164

Query: 488 NHPSVQGTLDSVHVQGPR 541
           NH +V   +   H   P+
Sbjct: 165 NHIAVSDFVAKSHSNIPK 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,001
Number of Sequences: 5004
Number of extensions: 61596
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)