Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_O18
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   5.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.9  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 553 PNYPT*DSVVTIDYPQRQLN 612
           PN PT DS V+   P+ +LN
Sbjct: 16  PNMPTMDSTVSSAKPEPELN 35


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 345 MTGPRCLRGFKYTTTPGLS 289
           +T P  + G KY  TP LS
Sbjct: 254 LTLPGAMEGLKYYVTPNLS 272


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 345 MTGPRCLRGFKYTTTPGLS 289
           +T P  + G KY  TP LS
Sbjct: 307 LTLPGAMEGLKYYVTPNLS 325


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 346 YDRPTMSTWL*I-HHHSRVVF*EINQI 269
           YDR ++S WL +  HH+ +    +N +
Sbjct: 114 YDRDSLSCWLQMTKHHNFIKVCSVNDV 140


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 445 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQ 359
           +LSSE ++P  D +  + ++     +PV+
Sbjct: 115 ILSSESYNPQVDFVADYKIEGKVLLLPVR 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,008
Number of Sequences: 438
Number of extensions: 4954
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)