Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_O13
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    95   9e-21
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    28   2.1  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    26   8.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.5 bits (227), Expect = 9e-21
 Identities = 54/143 (37%), Positives = 72/143 (50%)
 Frame = +1

Query: 409 IVEXGAGXG*TVYPPLTSNIAHRGRSVDLAIFSLHLAGISSIIGAMNFITTIIXIRLSNI 588
           + E G G G TVYPPL+S  +H G ++DLAI SL L GISS +G++N I T+I +R   +
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 589 SFDQLPLXV*AVEDYSXXXXXXTTCXSWSYYNIINRSKLXYIIXXSCWXXXXXFYIHHXF 768
           S  Q+PL   A+   S          +   + + +   L               Y  H F
Sbjct: 184 SLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLY-QHLF 242

Query: 769 XFXGHPEXYILIXPXXGXISHXI 837
            F GHPE YILI P  G +SH I
Sbjct: 243 WFFGHPEVYILIMPAFGVVSHII 265



 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +3

Query: 168 IXXELRSPGS--LLGDDXTXSXXXTAHA*IIXXSIVIPIXIGGFGN*XVPLILGAPDIAF 341
           I  EL +PGS  L G+    +   +AH  ++    +IP   G FGN  VPL++GAPD+A+
Sbjct: 42  IRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAY 101

Query: 342 PRXXNIRF 365
           PR  N  F
Sbjct: 102 PRVNNFTF 109


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 463 NIAHRGRSVDLAIFSLHLAGISSIIGAMNF 552
           NI + GRS  + +  L +AGIS I  AM++
Sbjct: 112 NIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 529 SIIGAM-NFITTIIXIRLSNISFDQL 603
           SI G + NFITT+  IRL+ I+ DQL
Sbjct: 156 SIAGLVQNFITTLDAIRLNFIAKDQL 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,739
Number of Sequences: 5004
Number of extensions: 27609
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)