Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_O09
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 29 4.3
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 29 4.3
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 29 4.3
AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein. 28 7.5
AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein. 28 7.5
AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein. 28 7.5
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 10.0
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 10.0
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 10.0
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ +Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 325 KAPVRAKTATLSAPTS*TDDITKAAKCAKKIY 420
K+P + T T+SAP+S DD T+ A C +++Y
Sbjct: 420 KSPGKNNTVTVSAPSSELDD-TECAICLEEMY 450
>AF031837-1|AAC13673.1| 624|Caenorhabditis elegans GLY5c protein.
Length = 624
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031836-1|AAC13672.1| 626|Caenorhabditis elegans GLY5b protein.
Length = 626
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>AF031835-1|AAC13671.1| 623|Caenorhabditis elegans GLY5a protein.
Length = 623
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 183 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 347
GF+ L NW + E + T + R+ + GLF I+ Y+ G PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 380 TTLLRQRNALRKFTNVTASMPGTVGRTTARALCLILAAAKFHCELQLDFRFDLLETE 550
T+LLR +L+ SMP +G + CLI + + +F L T+
Sbjct: 2583 TSLLRYSGSLKDICGACRSMPSVIGTPAILSACLITLEPEPSIRIMPEFHDQELSTK 2639
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 380 TTLLRQRNALRKFTNVTASMPGTVGRTTARALCLILAAAKFHCELQLDFRFDLLETE 550
T+LLR +L+ SMP +G + CLI + + +F L T+
Sbjct: 2583 TSLLRYSGSLKDICGACRSMPSVIGTPAILSACLITLEPEPSIRIMPEFHDQELSTK 2639
>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
protein C18H2.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 461 WFFQPYQASKR*RL*IFL--AHFAALVMSSVQEVGALNVAVFARTGAF 324
WF +P KR R +FL + ++ +V+EV NVA + GAF
Sbjct: 778 WFGKPEAFEKRWRYSLFLDKTDHSNSLLEAVREVNLTNVANCVKKGAF 825
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 380 TTLLRQRNALRKFTNVTASMPGTVGRTTARALCLILAAAKFHCELQLDFRFDLLETE 550
T+LLR +L+ SMP +G + CLI + + +F L T+
Sbjct: 2583 TSLLRYSGSLKDICGACRSMPSVIGTPAILSACLITLEPEPSIRIMPEFHDQELSTK 2639
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,605
Number of Sequences: 27780
Number of extensions: 293711
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -