Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_O08
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 32/90 (35%), Positives = 32/90 (35%)
 Frame = -3

Query: 789 GGXXPGGGGXXGF*RRGQXGGX*XFGXLGGXXGXKXXFXGFXPXFXGXFFPXXXGGFXGG 610
           GG   G GG  G    G  GG   FG  GG         GF     G  F    GGF GG
Sbjct: 187 GGGFGGFGGGSGGPPPGP-GGFGGFGGFGGEGHHHGGHGGFGGGPGG--FEGGPGGFGGG 243

Query: 609 PXPXLXGXGPLWXXXGGGPXXXPXXPXGWG 520
           P     G G      GGGP      P G G
Sbjct: 244 PGGFGGGLG----GFGGGPGGFGGGPGGHG 269


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/85 (23%), Positives = 23/85 (27%)
 Frame = +2

Query: 551 LGPPPXXXQXGPXPXRXGXGPPXNPPXXXGKNXPXKXGXXPXKXLFXPXXPPSXPXX*XP 730
           L PP                PP  PP    +  P          L  P  PP        
Sbjct: 292 LPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI 351

Query: 731 PXWPRR*NPXXPPPPGXXPPKXTXP 805
           P  P+  +   PPPP   P     P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQP 376


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 755 PXXPPPPGXXPPKXTXP 805
           P  PPPPG  PP    P
Sbjct: 10  PPPPPPPGFEPPSQPPP 26


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 497 VKPXXKKGPHPXGXXGXXLGPPPXXXQXGPXPXRXGXGPPXNPP 628
           + P     P P       +G PP      P P   G GPP  PP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,138
Number of Sequences: 5004
Number of extensions: 17553
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)