Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_N14
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765... 32 0.69
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 0.92
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 31 1.2
01_05_0560 - 23288078-23288370,23288448-23288733 30 2.8
12_02_1193 + 26891619-26892456,26892545-26893884 29 4.9
05_04_0030 - 17338646-17338669,17338817-17339386 29 6.5
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 29 6.5
05_02_0090 + 6507378-6507481,6507495-6507627,6507658-6507715,650... 28 8.5
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601... 28 8.5
>05_06_0074 +
25375431-25375631,25375785-25376195,25376474-25376589,
25377016-25377064,25377722-25378247,25378339-25379060
Length = 674
Score = 31.9 bits (69), Expect = 0.69
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = -1
Query: 605 IPRNQKVLIILPQFFLILRRMSSVTVSHINIYWLG--VKPEEALEQ---AVSLEGTKTAG 441
IP+ +K++ IL FL S+T S +N+Y++ + ++ L+ ++L G+ G
Sbjct: 231 IPQ-KKLIAILYVSFLRSTSPQSLTCSMVNLYYIDHELNIDDFLQDDDYKINLPGSNPDG 289
Query: 440 PLCYGGSRSAGQVQYQLYDVNVQWTPRYFLD 348
P G GQ+++Q Y++ + P F+D
Sbjct: 290 PNTMQG---IGQLEHQQYNLPLDLPPNSFVD 317
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.5 bits (68), Expect = 0.92
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 251 PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 391
P P T H I S +DD+ R VR +P+N ++ + S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +3
Query: 285 FLRKSTTCSSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLE 464
F + ST CS ++ + ++K + RP+ + + T+ + +T+ G+C +
Sbjct: 409 FHQSSTLCS-VEFALEYCYFLVEKKSTRPIYLDDFSKLSYCTTLAEMAITEIRGGYCYQK 467
Query: 465 GNCLFQRFLRFNPKPIYIDMGNRYRRHASEDQEELRQY 578
+ F R P P D+ + R+ ++D+ + RQ+
Sbjct: 468 CHPRF-RHRDMLPPPDSADLSSSRSRYTNDDEHDARQH 504
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 248 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 340
+PR P A H +L S DDV DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +2
Query: 203 RQAGQEPLWLYQGDNVPRA-PSTADHPILPSK---IDDVQLDPNRRYV--RSVTNPENNE 364
RQA W+Y G+ PRA P AD PS+ V+L P +R V S ++ ++ +
Sbjct: 308 RQAAGRANWVYNGELPPRANPQKADDEAGPSQKRMRGQVKLAPKKRRVPPSSDSDADDED 367
Query: 365 ASIEH 379
+ EH
Sbjct: 368 DAEEH 372
>05_04_0030 - 17338646-17338669,17338817-17339386
Length = 197
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -1
Query: 596 NQKVLIILPQFFLILRRMSSVTVSHINIY-WLGVKPEEALEQAVSLEGTKTAGPL 435
++ ++ +LPQ+F I+ ++ V V I+ W K + AL A++L G GP+
Sbjct: 55 DRSLMWLLPQWFCIIAAVAMVAVFAAEIFPWCESKGDVAL-CAIALAGALLMGPI 108
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 453 CTLEGNCLFQRFLRFNPK-PIYID 521
C G+ LF FLRFNPK P + D
Sbjct: 84 CAPLGHVLFDEFLRFNPKNPYWFD 107
>05_02_0090 +
6507378-6507481,6507495-6507627,6507658-6507715,
6508756-6508814,6509127-6509169,6509325-6509422,
6509619-6509744
Length = 206
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 472 ACSNASSGLTPSQYILIWETVTDDMRRRIKKNC 570
A N +G +Y ++WE +++ + R +KNC
Sbjct: 155 AYQNYDAGNRQFRYNIVWEDISEKLTTRNRKNC 187
>05_02_0047 +
6006808-6007129,6009229-6009890,6009980-6010129,
6010765-6010857,6011370-6011675
Length = 510
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 103 FSSGAVLCSGFVPXVHPADLXATANTAPDNTYSATSWPG 219
F++G +L +GFV +H A+ ++ P + + + +PG
Sbjct: 181 FAAGVILATGFVHMLHDAEHALSSPCLPAHPWRSFPFPG 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,111,979
Number of Sequences: 37544
Number of extensions: 439139
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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