Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_N11
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 3e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 53 3e-07
12_02_0911 + 24236374-24237582 31 1.6
04_04_0701 + 27373057-27374013 31 1.6
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.6
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.7
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 4.9
11_01_0752 - 6327269-6327764,6328571-6328839 29 6.5
06_03_0685 - 23499779-23500204 29 6.5
03_06_0519 - 34481751-34482722 29 6.5
01_01_1154 - 9178427-9178738,9179819-9180874 29 6.5
05_05_0221 - 23385626-23386702 28 8.5
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.4 bits (130), Expect = 3e-08
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +2
Query: 311 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 490
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 491 RG---KLTGSVTDLITYRGPRQ 547
RG +L VT L + P +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK 172
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 573 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 752
A+E AL LE V + + + S ND L D++ EFL+EQ + + ++ + L++
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236
Query: 753 MMDKHAALGKVIFDKKLL 806
+ H G FD+KLL
Sbjct: 237 VGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.8 bits (121), Expect = 3e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 344 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 514
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 515 TDLITYRGPRQ 547
T L + P +
Sbjct: 194 TPLTEFDHPEK 204
Score = 31.5 bits (68), Expect = 0.92
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 645 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGKVIFDKKLL 806
S ND L D++ EFL+EQ + + ++ + L+++ H G FD+KLL
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>12_02_0911 + 24236374-24237582
Length = 402
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 558 ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 725
++GA+A + A L+L+ S +EV +H+ D+LS +EQY G L
Sbjct: 169 DAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSL 226
>04_04_0701 + 27373057-27374013
Length = 318
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +3
Query: 378 GLTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRTGAPANTSW 557
G+ +++++ AP S SS L ++ +R ++ TT S G S + PTS P++ SW
Sbjct: 235 GVANKAVKTEAPTSAYSSSSL---SSMSRDTTATTSSAGTSTGSSEPTSFPVVTPSSWSW 291
Query: 558 E 560
+
Sbjct: 292 D 292
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 582 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 752
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 564 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 671
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 371 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 487
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 460 RDQAH*LPAHEGQADRLRNRPHHVQGPPPTRRGRA 564
R A LP+ G +R R RP + P RRGRA
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGRA 167
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 647 QLQRLPPGRLLVRGIP---RRTVQGPARPRR-QGLDPQEDDGQARRPRXSHLR 793
+++R PP R +RG+P R + P R R GL P+ RRP+ H R
Sbjct: 47 RIRRWPPRRGRIRGLPPLGGRICRRPPRGGRIHGLPPRGGRIHRRRPQGRHRR 99
>03_06_0519 - 34481751-34482722
Length = 323
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Frame = +1
Query: 337 PGGSGRVNPVLSHGGLLLDRYGE-PPRLREAILRCCD*RTRARDQAH*LPAHEGQADRLR 513
PGGSG+ P G R E PP + R PA G +
Sbjct: 8 PGGSGQKPPGGPPGNRKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNA 67
Query: 514 NRPHHVQGPPPTRRGRAAHQP-SSTPSSWR 600
R + G PP G AA P SS+P++ R
Sbjct: 68 RRSSRLAGAPPATPGAAAAAPTSSSPTAAR 97
>01_01_1154 - 9178427-9178738,9179819-9180874
Length = 455
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 538 PPPTRRGRAAHQPSSTPSSWR 600
PPP RR +A H SST W+
Sbjct: 76 PPPPRRKKAGHTSSSTRPRWQ 96
>05_05_0221 - 23385626-23386702
Length = 358
Score = 28.3 bits (60), Expect = 8.5
Identities = 28/72 (38%), Positives = 31/72 (43%)
Frame = +1
Query: 346 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGQADRLRNRPH 525
S V L HG L +G L ILRCCD R A +A A AD R +P
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD-RALAALRAG-GDAESSSADTKR-KPA 92
Query: 526 HVQGPPPTRRGR 561
Q P TRR R
Sbjct: 93 TAQ--PSTRRRR 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,895
Number of Sequences: 37544
Number of extensions: 442624
Number of successful extensions: 1528
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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