Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_N06
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 176 3e-45
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 176 3e-45
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.003
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.8
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 3.6
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 4.8
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 176 bits (429), Expect = 3e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Frame = +3
Query: 450 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 629
EII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ G
Sbjct: 97 EIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIG 156
Query: 630 AREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 770
AREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 157 AREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
Score = 106 bits (255), Expect = 4e-24
Identities = 55/102 (53%), Positives = 74/102 (72%)
Frame = +1
Query: 151 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 331 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHALKL 456
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA ++
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEI 98
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 176 bits (429), Expect = 3e-45
Identities = 87/107 (81%), Positives = 97/107 (90%)
Frame = +3
Query: 450 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 629
EII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ G
Sbjct: 97 EIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIG 156
Query: 630 AREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 770
AREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 157 AREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
Score = 104 bits (249), Expect = 2e-23
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 3/98 (3%)
Frame = +1
Query: 172 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 342
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 343 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHALKL 456
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA ++
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEI 98
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.003
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +3
Query: 411 QKTDGRTYCQTCVEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPL 590
+K T + II TGENP+ VL AI P R + +
Sbjct: 138 KKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKER 197
Query: 591 RRVNQAI-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSN 767
+R A+ W+L E + K +++ + E+I +SN + KKKD L R+ N
Sbjct: 198 QRRRIALQWIL----GECKSSSPKRLSDRIVKEIIAIRSKTSNCF--KKKDHLHRMCLVN 251
Query: 768 R*N 776
R N
Sbjct: 252 RGN 254
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 447 VEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 596
++I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 160 LDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 187 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 330
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 514 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 630
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,020
Number of Sequences: 5004
Number of extensions: 67233
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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