Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M23
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   3.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.1  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   8.1  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 83  LIGKFILLFLIYVSSAILETKNSIKLFFEIVYEDNFSTFAEDLPNCVCNFKDATVDHFLY 262
           L+  F  +F +  S A+L+ +       E    ++     EDL +  C F  + VD   Y
Sbjct: 229 LLKVFSSVFKVAYSKALLDAEKLFPSIDEAAIAEDIGILIEDLESDACKFSHSVVDFSNY 288


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 264 KYKKWSTVASLKLHTQFGKSSAKVEKLSSYTISKKSLMLFFVSKIAE 124
           K +K   +  L+   Q   SS+  E+  S+ +SKK L L  +SK  E
Sbjct: 800 KLEKLLMIERLETSDQSPTSSSNFEESESFAVSKKVLELVRISKNKE 846


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 255  KWSTVASLKLHTQFGKSSAKVEKLSSYTISKKSLMLFFVSKIAEDT*IRKSRINLPIRAA 76
            KWST   L   +QF  S  KV++    +  +K ++    + IAED  I +  +   +   
Sbjct: 2142 KWSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLLTKQLSNL 2201

Query: 75   KFTI 64
             F +
Sbjct: 2202 GFQV 2205


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/70 (22%), Positives = 27/70 (38%)
 Frame = -2

Query: 567 CKGTSVKKFVKFNKFIYASTVTFIAVSKVYLIITLTS*GR*TGINVSINHTVSPRNIIHF 388
           C G     F+K + F       F+ V   +      S G  T   ++  +T +    +  
Sbjct: 726 CLGNMYSHFIKSSSFAVVLPAIFVLVPSGFAAQGGVSAGLDTASQITSKNTTTNTTTVTT 785

Query: 387 ENINSTSLRF 358
           EN  ++SL F
Sbjct: 786 ENSQNSSLEF 795


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = +2

Query: 416 VWLMLTFIPVHLPQLVKVMIRYTFDTAINVTVDAYMNLLNFTNFLTDVPLQSFAGLTISI 595
           +++ LTF+     QL K M+      A+ +      NL+   N L  +PL     LT S+
Sbjct: 65  LFVHLTFLLGVYTQLPKEMLSQAKIKALPIYTPK-KNLVQIYNIL--LPLL----LTPSL 117

Query: 596 LIARLTIHYWESILSHLHI 652
           L   L +HY + +L HL++
Sbjct: 118 LQGPLNLHYADLLLLHLYL 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,241
Number of Sequences: 5004
Number of extensions: 50574
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)