Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_M19
         (1309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.36 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 827 PPAXXXGGGPXPXXGXXXGGPPPXPXPXPP 738
           P A   G  P P  G   GGPP  P    P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.6 bits (56), Expect = 0.48
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 770 GPPPXPXPXPPPPGXGXXPP 711
           G PP P   PPP G    PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = -3

Query: 935 GGXXPPPPXXXXXPXPXGGXGAGAPPXXXXXXXXPPPPAXXXGGGP 798
           GG  PP       P P     +G PP        P  P      GP
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -1

Query: 1003 GXPGPXPPPXRXXXXXPPPXPGGGGXXPPP 914
            G PGP P P +         P      PPP
Sbjct: 19   GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 706 PXGGXXPXPGGGGXGXGXGGGPPXXXP 786
           P  G  P P  G    G  G PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 764 PPXPXPXPPPP 732
           PP P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.152    0.530 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,806
Number of Sequences: 438
Number of extensions: 13585
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45023625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)